PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00013.1.g08050.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 470aa MW: 50671.9 Da PI: 11.3518

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00013.1.g08050.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.3	7.3e-05	279	302	3	26
HHHHHHHHHHHHHHHHHHHHHHCT CS HLH 3 rahnerErrRRdriNsafeeLrel 26 r+h e+E+rRR+ri+s +++Lr + Zjn_sc00013.1.g08050.1.am.mk 279 RNHREAEKRRRERIKSHLDRLRNI 302 78********************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.2E-8	279	325	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence Send to blast
MPAKPKRFVK ATPLVQRAIV SSPGDRWEKG SRDALASRIM VITNFRLRLI FRLCSVAPLF 60 SRIAPGTIFR GRKGWRSETL AVRCIRSGGA TARALQLGHG RQGKVRLTKW YTPYQQKQRA 120 KVGTIPAVQP LQWTAGTRCD RRVPSCQDSF SLYVPLSPVT SQHVRGPPLA DRQQEGCNSP 180 YPRNNTPQQL TPSPPPLPLR RSCRARPSSR MFPADVSALP LPGAARQGEG GVVPLLPPFF 240 MGSIWQAGAG GSASASEEDE AAAAAAAAAA HDRALAASRN HREAEKRRRE RIKSHLDRLR 300 NIDKASLLAK AVERVRDLKQ RVAGVGEAAP AHLFPTEHDE IVVLASGAAF EASVCCADRS 360 DLLPELIETL RALRLRTLRA EMATLGGRVR NVLVLARDTT GRDIHGDGGV VTGDDGGYGH 420 SDLAAAGSIN GNGGEFLKEA LRALVERPGA GAGDRPKRRR VSDGNMQAAA

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence Send to blast

MPAKPKRFVK ATPLVQRAIV SSPGDRWEKG SRDALASRIM VITNFRLRLI FRLCSVAPLF  60
SRIAPGTIFR GRKGWRSETL AVRCIRSGGA TARALQLGHG RQGKVRLTKW YTPYQQKQRA  120
KVGTIPAVQP LQWTAGTRCD RRVPSCQDSF SLYVPLSPVT SQHVRGPPLA DRQQEGCNSP  180
YPRNNTPQQL TPSPPPLPLR RSCRARPSSR MFPADVSALP LPGAARQGEG GVVPLLPPFF  240
MGSIWQAGAG GSASASEEDE AAAAAAAAAA HDRALAASRN HREAEKRRRE RIKSHLDRLR  300
NIDKASLLAK AVERVRDLKQ RVAGVGEAAP AHLFPTEHDE IVVLASGAAF EASVCCADRS  360
DLLPELIETL RALRLRTLRA EMATLGGRVR NVLVLARDTT GRDIHGDGGV VTGDDGGYGH  420
SDLAAAGSIN GNGGEFLKEA LRALVERPGA GAGDRPKRRR VSDGNMQAAA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	456	460	KRRRV

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU970714	8e-97	EU970714.1 Zea mays clone 349344 DNA binding protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004981312.1	3e-92	transcription factor bHLH106-like
TrEMBL	A0A368SD61	8e-91	A0A368SD61_SETIT; Uncharacterized protein
STRING	Sb01g003830.1	3e-86	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9578	30	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41130.1	1e-19	bHLH family protein