PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00013.1.g09230.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

SBP

Protein Properties

Length: 584aa MW: 62915.2 Da PI: 7.0103

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00013.1.g09230.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.5	2.9e-41	153	230	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC adl+ ak+yhrrhkvCe+h+ka++++v ++ qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+q+ Zjn_sc00013.1.g09230.1.sm.mkhc 153 ACQVEGCVADLTAAKDYHRRHKVCEMHAKASTAVVGKTVQRFCQQCSRFHLLEEFDEGKRSCRRRLAGHNRRRRKTQP 230 5**************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.3E-33	148	215	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.223	151	228	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.14E-38	152	232	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.5E-29	154	227	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 584 aa Download sequence Send to blast
MEAARLGAQS SQLYGGGLGE LDLNMREKRV FSWDLNDWSW DSEHFVATPV PASVTNGLEL 60 NSSPSSSEKA EAEVARNGAM RGDSDKRKRV VVIDECEAED QDLIENSGGG GALSLKIGSD 120 AVSPRTLESS GVNEEVRNGK KIKAQGGISS GPACQVEGCV ADLTAAKDYH RRHKVCEMHA 180 KASTAVVGKT VQRFCQQCSR FHLLEEFDEG KRSCRRRLAG HNRRRRKTQP DISFGGAASI 240 EDKVSNYLLL SLLGICANLI SGGTENSNGQ ELLSNLLKNL GSVAKSLELK ELSKLLEACQ 300 SLQNGSNAGT SGTANALANN SAAEAAGPSN SNLLFMNGSQ CGQASSSAIP VQQKATMVAN 360 PGQIMLDKRL APSSFHYCKI LSEDTAAITD DAELDDRETE CLSFCCPAPG SRGRGFIEVE 420 DSGFSNSFFP FIIAEQDVGI SAWKNARDNT GFTPEDYARQ RCNDAYLNLV QKKIDKHISE 480 GHVVVGVPSS MCPVITDFVK PGKVSLEIGR SVSMAAPVAK CHLCRNQALK YQSAAVRTFL 540 YRPAMLTMMG VAVVCVCVGI LLHTMPRVYA APTFRWELLE RGAM

Sequence ? help Back to Top

Protein Sequence Length: 584 aa Download sequence Send to blast

MEAARLGAQS SQLYGGGLGE LDLNMREKRV FSWDLNDWSW DSEHFVATPV PASVTNGLEL  60
NSSPSSSEKA EAEVARNGAM RGDSDKRKRV VVIDECEAED QDLIENSGGG GALSLKIGSD  120
AVSPRTLESS GVNEEVRNGK KIKAQGGISS GPACQVEGCV ADLTAAKDYH RRHKVCEMHA  180
KASTAVVGKT VQRFCQQCSR FHLLEEFDEG KRSCRRRLAG HNRRRRKTQP DISFGGAASI  240
EDKVSNYLLL SLLGICANLI SGGTENSNGQ ELLSNLLKNL GSVAKSLELK ELSKLLEACQ  300
SLQNGSNAGT SGTANALANN SAAEAAGPSN SNLLFMNGSQ CGQASSSAIP VQQKATMVAN  360
PGQIMLDKRL APSSFHYCKI LSEDTAAITD DAELDDRETE CLSFCCPAPG SRGRGFIEVE  420
DSGFSNSFFP FIIAEQDVGI SAWKNARDNT GFTPEDYARQ RCNDAYLNLV QKKIDKHISE  480
GHVVVGVPSS MCPVITDFVK PGKVSLEIGR SVSMAAPVAK CHLCRNQALK YQSAAVRTFL  540
YRPAMLTMMG VAVVCVCVGI LLHTMPRVYA APTFRWELLE RGAM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-30	147	227	4	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002466159.1	1e-174	squamosa promoter-binding-like protein 6
Swissprot	Q75LH6	1e-155	SPL6_ORYSJ; Squamosa promoter-binding-like protein 6
TrEMBL	C5WU18	1e-173	C5WU18_SORBI; Uncharacterized protein
STRING	Sb01g002530.1	1e-174	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1998	38	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	2e-48	squamosa promoter-binding protein-like 12

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]