PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00013.1.g10390.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HSF

Protein Properties

Length: 340aa MW: 36741.1 Da PI: 4.3617

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00013.1.g10390.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	85.1	9.5e-27	51	123	2	74
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks 74 Fl+k+ye+++d+++++++sw nsfvv+++ efa+++LpkyFkhsnf+SFvRQLn+Yg ++ ++++ +++ Zjn_sc00013.1.g10390.1.sm.mkhc 51 FLMKTYEMVDDPATDDVVSWGPGDNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGNSQPQQPQVQNAP 123 9******************999**********************************9999988877544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	3.3E-30	47	145	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	5.4E-28	48	117	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	3.81E-25	49	115	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	7.2E-16	51	74	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	3.1E-22	51	118	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.2E-16	89	101	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.2E-16	102	114	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MEGGVAAAAA AAAAASTVTT AVAPPVAPAP AATHAAVANG GGAPTAPPPP FLMKTYEMVD 60 DPATDDVVSW GPGDNSFVVW NTPEFARDLL PKYFKHSNFS SFVRQLNTYG NSQPQQPQVQ 120 NAPVPACVEV GKFGLEEEIE RLKRDKNVLM QELVRLRQQQ QTTDHQLQTL GKRLQGMESR 180 QQQMMSFLAK AMQSPGFLAQ FVQQNENSSR RIIAVNKKRR LPKQDGGLDS ESASLDVTDS 240 IPGGTFGMPG PEGIFPLAEE GDDSVPIETD DILLGDETEK LPGIIDSFWE QFLVASPVTG 300 DNDEVDSGVL ETPLENRWNK VENLANLTEQ MGLLSSNHKG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	4e-18	41	110	19	88	Heat shock factor protein 1
5d5v_B	4e-18	41	110	19	88	Heat shock factor protein 1
5d5v_D	4e-18	41	110	19	88	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT040131	1e-117	BT040131.1 Zea mays full-length cDNA clone ZM_BFc0066O22 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004980999.1	1e-119	heat stress transcription factor A-1
Swissprot	Q84T61	1e-116	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	A0A368SBY6	1e-117	A0A368SBY6_SETIT; Uncharacterized protein
STRING	Pavir.Ia00087.1.p	1e-117	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5097	31	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02990.1	2e-65	heat shock transcription factor A1E

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]