PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00013.1.g10410.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 117aa MW: 12978 Da PI: 5.2407

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00013.1.g10410.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.7	8.6e-11	9	54	3	45
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 W+ E e++ +a + +G++ +W +Ia+ +g g+t+ ++k ++ Zjn_sc00013.1.g10410.1.sm.mk 9 TWSWSENERFENALATYGSDtpdRWQRIAAVVGGGKTADDVKRHYE 54 7*******************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.876	2	57	IPR017877	Myb-like domain
SMART	SM00717	2.5E-8	6	59	IPR001005	SANT/Myb domain
Pfam	PF00249	3.3E-9	8	54	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.33E-10	8	56	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.3E-5	9	55	IPR009057	Homeodomain-like
CDD	cd00167	4.41E-5	14	56	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 117 aa Download sequence Send to blast
MSSSRTTTTW SWSENERFEN ALATYGSDTP DRWQRIAAVV GGGKTADDVK RHYEELELDI 60 GGITEKGRRR QGRHAGGDGN SNGEIILRLA IARIAEPTTS SDPRHEDDAW TNFKGSE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797915.1	1e-19	protein RADIALIS-like 3
TrEMBL	A0A3L6SDU9	1e-20	A0A3L6SDU9_PANMI; Protein RADIALIS-like 3
TrEMBL	A0A3L6TPY8	1e-20	A0A3L6TPY8_PANMI; Protein RADIALIS-like 3
STRING	OPUNC03G38540.1	1e-20	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP270	38	230

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39250.1	3e-16	RAD-like 1