PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00014.1.g00250.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HB-other
Protein Properties Length: 68aa    MW: 7582.32 Da    PI: 4.4015
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00014.1.g00250.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.51.3e-096382254
                                  SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                      Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54
                                  +ryps +e+ +LA ++gL+  q+++WF N R +
  Zjn_sc00014.1.g00250.1.sm.mk  6 DRYPSDSEKLRLAVSTGLSRGQISNWFINARVR 38
                                  79*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.046142IPR001356Homeobox domain
SuperFamilySSF466891.37E-13551IPR009057Homeodomain-like
CDDcd000861.35E-10643No hitNo description
Gene3DG3DSA:1.10.10.604.5E-17755IPR009057Homeodomain-like
PfamPF059201.7E-12838IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 68 aa     Download sequence    Send to blast
MADSCDRYPS DSEKLRLAVS TGLSRGQISN WFINARVRLW KPMIEEMYND EFSEDGSLSN  60
STSGASSS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0823966e-44AY082396.1 Zea mays knotted1-interacting protein (kip) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559582.11e-27BEL1-like homeodomain protein 11
RefseqXP_024312616.11e-27BEL1-like homeodomain protein 11
RefseqXP_024312617.11e-27BEL1-like homeodomain protein 11
SwissprotO656855e-21BLH6_ARATH; BEL1-like homeodomain protein 6
TrEMBLI1GPL23e-26I1GPL2_BRADI; Uncharacterized protein
STRINGBRADI1G12520.15e-27(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.22e-22BEL1-like homeodomain 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]