PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00014.1.g00950.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 249aa MW: 26539.9 Da PI: 6.7904

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00014.1.g00950.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00034	180	202	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg++F ++ L H r H Zjn_sc00014.1.g00950.1.sm.mk 180 FQCNLCGRCFDSHQALGGHVRGH 202 89**************9999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.55E-5	178	205	No hit	No description
PROSITE profile	PS50157	10.637	180	207	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	182	202	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MAVGEDYHSC SDDSDDDVDR YEFLARQPTD DPARRHAEEE ASDDDETGDE RVQDGGSRGK 60 MALTERDGRV EGSDASPSPK KARLGLITAC PSAAHQTPTS ISSGTDRMVS ASPHGARRDR 120 VSSWSEDETE NRRDGAHERP EPRRGKANKS DTKKPLAGVT KSAKTTSPSS SAAASADGRF 180 QCNLCGRCFD SHQALGGHVR GHLQKAKIAA IAAEASLHDT SSRVTSAAIA RKRLSTMQRV 240 AGIPAEVGT

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP24421	2	2