PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00014.1.g02690.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TALE
Protein Properties Length: 708aa    MW: 78112.6 Da    PI: 7.7888
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00014.1.g02690.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.17e-094474851755
                                   HHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                      Homeobox  17 elFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                   e ++k +yps++++  LA+++gL+ +q+ +WF N+R ++
  Zjn_sc00014.1.g02690.1.am.mk 447 ETYYKWPYPSETQKVALAESTGLDLKQINNWFINQRKRH 485
                                   568899******************************885 PP
2ELK361.5e-12405426122
                           ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                   ELKh+Ll+KYsgyL+sLkqE+s
  Zjn_sc00014.1.g02690.1.am.mk 405 ELKHHLLKKYSGYLSSLKQELS 426
                                   9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.3E-8235310IPR005540KNOX1
PfamPF037903.4E-15236309IPR005540KNOX1
SMARTSM012562.3E-24317368IPR005541KNOX2
PfamPF037912.6E-20323366IPR005541KNOX2
SMARTSM01188570326346IPR005539ELK domain
SMARTSM011884.9E-7405426IPR005539ELK domain
PROSITE profilePS5121311.331405425IPR005539ELK domain
PfamPF037891.8E-9405426IPR005539ELK domain
PROSITE profilePS5007112.698425488IPR001356Homeobox domain
SuperFamilySSF466891.33E-18426501IPR009057Homeodomain-like
SMARTSM003892.1E-11427492IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.9E-26430491IPR009057Homeodomain-like
CDDcd000861.10E-11437489No hitNo description
PfamPF059202.4E-14445484IPR008422Homeobox KN domain
PROSITE patternPS000270463486IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MAPRPIPREH DDGRPSPHAC AVRLALPAHV LASQDYCQYH RNTSTSEGYT ATTPYHYRQR  60
QAPGSKGSSG DERIMAVPLG EASVYCALPR VFGYEIPYAY PCLLVTSPPA GRWLNGIIRL  120
LTDELGDSGR SARSLHQYIP GDPPAPMEEI SHNHFGGVGA SSHGQHQHNP WGSALSAVVG  180
PPPPLTLNTA ATGNSGASSG GNNPVLQLAN GGSLLDACVK AKEPSSSSPY AGDVEAIKAK  240
IISHPHYYSL LAAYLECQKA SPTLLLLLLH EKLLLHLMSN MEHAACNCKL VGAPPEVSAR  300
LTAMAQELEA RQRTSLLGLG SATEPELDQF MEAYHEMLVK FREELTRPLQ EAMEFMRRLE  360
LQLDSLSISS RSLRNILSSG SEEDQECSGG ETQLPEVDAH GVDQELKHHL LKKYSGYLSS  420
LKQELSKKKK KGKLPKEARQ KLLSWWETYY KWPYPSETQK VALAESTGLD LKQINNWFIN  480
QRKRHWKPSE EMHHMMMDGY HTSNAFYMDG HFFNEAGMYR DNSRIYTKGN DNEVELSRTY  540
LQCDGRWCPP KRRRHPPVLA PRLRRRNRPS EVRVRSITCL GWVCLCLALV PARTRARFGI  600
LGAMAPVHGV AGRCLPRADE AASGARDAAC PEFGHDAQAD SAAASVLQLQ VCKPLDGMPA  660
RTGITSESFL AFGFPICDAG YSLTCALANW SDRWERLLSS TGDDGVSP
Functional Description ? help Back to Top
Source Description
UniProtBinds to RNA (PubMed:17965274). Possible transcription factor that regulates genes involved in development. Mutations in KN-1 alter leaf development. Foci of cells along the lateral vein do not differentiate properly but continue to divide, forming knots. May participate in the switch from indeterminate to determinate cell fates. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:17965274}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3174210.0DQ317421.1 Chasmanthium latifolium KNOTTED1 homeodomain protein (KN1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981913.10.0homeotic protein knotted-1
SwissprotP243450.0KN1_MAIZE; Homeotic protein knotted-1
TrEMBLA0A368SF910.0A0A368SF91_SETIT; Uncharacterized protein
STRINGPavir.J00864.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98863145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-81KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Lowe B,Mathern J,Hake S
    Active Mutator elements suppress the knotted phenotype and increase recombination at the Kn1-O tandem duplication.
    Genetics, 1992. 132(3): p. 813-22
    [PMID:1334895]
  2. Sinha N,Hake S
    Mutant characters of knotted maize leaves are determined in the innermost tissue layers.
    Dev. Biol., 1990. 141(1): p. 203-10
    [PMID:2391001]
  3. Chen H,Jackson D,Kim JY
    Identification of evolutionarily conserved amino acid residues in homeodomain of KNOX proteins for intercellular trafficking.
    Plant Signal Behav, 2014. 9(3): p. e28355
    [PMID:24603432]
  4. Sinha NR,Williams RE,Hake S
    Overexpression of the maize homeo box gene, KNOTTED-1, causes a switch from determinate to indeterminate cell fates.
    Genes Dev., 1993. 7(5): p. 787-95
    [PMID:7684007]
  5. Greene B,Walko R,Hake S
    Mutator insertions in an intron of the maize knotted1 gene result in dominant suppressible mutations.
    Genetics, 1994. 138(4): p. 1275-85
    [PMID:7896105]
  6. Mathern J,Hake S
    Mu element-generated gene conversions in maize attenuate the dominant knotted phenotype.
    Genetics, 1997. 147(1): p. 305-14
    [PMID:9286690]