PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00014.1.g05320.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 401aa MW: 43793.2 Da PI: 4.7628

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00014.1.g05320.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.4	7.8e-11	250	290	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 rrRR+riN+++ L++l+P+ +K++ +++Le+Av+Y++ Lq Zjn_sc00014.1.g05320.1.sm.mk 250 RRRRERINEKLKILQKLVPNG-----TKVDISTMLEEAVQYVRFLQ 290 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.71E-13	239	297	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.351	240	289	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.4E-13	245	300	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.8E-12	246	295	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.93E-12	249	294	No hit	No description
Pfam	PF00010	3.0E-8	250	290	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MSQAELLHWC SAYQAAPPAD EESEIVAQFL AAPYPYQNDD DDQDHQKQLG DDIRTGSAYW 60 QEHVADPGAG ACYWPPNADS SNRGNAGSDG GYVDDGGFYY YLGEPDVSLG INTRATLPCT 120 SLDLNLLGDG EEERSVCAQL PVPDPNPSAA DHVRVFHHDI GNDGTTVSRP KRKVPASRDE 180 GDLRGGHRKK EKKASTSSKP AQKCFQEKAQ SSSSCSGNES NCSEAQACGV NVKTRASKGS 240 ATDPQSLYAR RRRERINEKL KILQKLVPNG TKVDISTMLE EAVQYVRFLQ LQIKAKSKDQ 300 NIAAELPLLA HYSPDLQVQV VNDGDQQYNG QRLGTEPELE AELKGGGDRL LVPKLEKYDD 360 ETMEKKTDCV MGQQLLDQAS WPNQEADEAA ANAKASATLH A

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MSQAELLHWC SAYQAAPPAD EESEIVAQFL AAPYPYQNDD DDQDHQKQLG DDIRTGSAYW  60
QEHVADPGAG ACYWPPNADS SNRGNAGSDG GYVDDGGFYY YLGEPDVSLG INTRATLPCT  120
SLDLNLLGDG EEERSVCAQL PVPDPNPSAA DHVRVFHHDI GNDGTTVSRP KRKVPASRDE  180
GDLRGGHRKK EKKASTSSKP AQKCFQEKAQ SSSSCSGNES NCSEAQACGV NVKTRASKGS  240
ATDPQSLYAR RRRERINEKL KILQKLVPNG TKVDISTMLE EAVQYVRFLQ LQIKAKSKDQ  300
NIAAELPLLA HYSPDLQVQV VNDGDQQYNG QRLGTEPELE AELKGGGDRL LVPKLEKYDD  360
ETMEKKTDCV MGQQLLDQAS WPNQEADEAA ANAKASATLH A

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	170	192	KRKVPASRDEGDLRGGHRKKEKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012704353.1	1e-94	transcription factor bHLH85
Refseq	XP_025796889.1	1e-94	transcription factor bHLH85-like
TrEMBL	A0A2S3IHT2	3e-93	A0A2S3IHT2_9POAL; Uncharacterized protein
TrEMBL	K4ALE0	3e-93	K4ALE0_SETIT; Uncharacterized protein
STRING	Si039720m	6e-94	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14445	21	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14760.1	7e-34	bHLH family protein