PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00014.1.g05760.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 746aa    MW: 77715.1 Da    PI: 7.5968
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00014.1.g05760.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.37.8e-08391425138
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgt 38 
                                   s y+GV+++++ grW A+I  +s    +k  +lg+f t
  Zjn_sc00014.1.g05760.1.am.mk 391 SIYRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFST 425
                                   57****************999754...4********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103210.31270356IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-7299357IPR016177DNA-binding domain
SMARTSM003801.4E-4300362IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-6327356IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-6391426IPR016177DNA-binding domain
PROSITE profilePS5103211.719392549IPR001471AP2/ERF domain
SMARTSM003809.1E-4392436IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.4E-5392425IPR001471AP2/ERF domain
SMARTSM003803.6E-5496555IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-6523549IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 746 aa     Download sequence    Send to blast
MTSNSSQNVS SCSTGGGDAA AGGGSWLGFS LSPHHVASMD AAADGARGVP QHHLGLFYPP  60
VTSTPAPFCY ALGGSGQDSV VGQAAGASGG GFYPALSSMP LRSDGSLCIT DAYRRSEEGQ  120
HHGMVASSAS PKLEDFLGAG PAMALSLDNS SFYYGGGHGG HHGHGQDHGG YPQPLHCAMI  180
PGAAATHDVY GHASMVDEQS AAAIAASWFA ARGVGGYDVN STGVDAGLVP CHPLALSMSS  240
GTGSQASCVT MQMGAHADPV AEYIAMEGSK KRGTDRGAGA GQKQTVHRKS IDTFGQRTSQ  300
YRGVTSSSPH ACVVFHGAKA GIGGRGGGYD MEEKAARAYD LAALKYWGPS THINFSLEDY  360
REELEEMKNM TRQEYVAHLR RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVSGNKDLYL  420
GTFSTCSVFH LLFLSIHVLQ ILVLAAIREA AEAVTALAPP RRMFAPPIPA HFSPRFCACV  480
AGCRPQLALA FGHLFVRLAR RGPAHLRAPD RASLSRFACL RIATQEEAAE AYDVAAIKFR  540
GLNAVTNFDI TRYDVEKIME SSTLLPSELV RRRKDGDVGT VAAAAAITEG DATAVANAAA  600
ALVHAGNGSN AVEWKIQAAA ALPAAPGRTD EHVQQNHGIL ASEAFSAFSG LDDMVPGVEA  660
DNAHGNASAH MSNASSLATS VSNSREQSPD RGGGLAVLFA KPVAAASKLA CPPLPLGSWV  720
SPSPVSARPV VSIAHLPMFA AWTDAA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796942.10.0AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A1E5VRG80.0A0A1E5VRG8_9POAL; AP2-like ethylene-responsive transcription factor ANT
STRINGPavir.J24038.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-80AP2 family protein