PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00014.1.g05830.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TALE
Protein Properties Length: 488aa    MW: 54923.5 Da    PI: 8.9952
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00014.1.g05830.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.51.1e-084134472155
                                   HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                      Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                   + +yps++e+  LA+ +gL+++q+ +WF N+R ++
  Zjn_sc00014.1.g05830.1.am.mk 413 RWPYPSETEKIALAEATGLDQKQINNWFINQRKRH 447
                                   679*****************************885 PP
2ELK40.55.8e-14367388122
                           ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                   ELKh+Ll+KY+gyLg+L+qEFs
  Zjn_sc00014.1.g05830.1.am.mk 367 ELKHHLLKKYGGYLGGLRQEFS 388
                                   9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.0E-19234278IPR005540KNOX1
PfamPF037901.2E-21235276IPR005540KNOX1
SMARTSM012564.2E-26284335IPR005541KNOX2
PfamPF037915.3E-22290334IPR005541KNOX2
PfamPF037891.5E-10367388IPR005539ELK domain
SMARTSM011881.5E-7367388IPR005539ELK domain
PROSITE profilePS5121311.505367387IPR005539ELK domain
PROSITE profilePS5007113.151387450IPR001356Homeobox domain
SuperFamilySSF466891.33E-19388458IPR009057Homeodomain-like
SMARTSM003892.9E-12389454IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-27392453IPR009057Homeodomain-like
CDDcd000862.21E-11399450No hitNo description
PfamPF059203.9E-16407446IPR008422Homeobox KN domain
PROSITE patternPS000270425448IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MHRRVRPSRQ AERSEQRASE LIKLLRRDSI VDLTRPQQPG IRRGSRGNGQ GDGGCMAWAR  60
CVGRWPRDLT RPGRQLDPPP AIRAALRPDS GAQCWSVLLA SFSASSRHAR MFLYRYLVWS  120
FPLRWSLSIL AENSLAVRQA AVILRLTNTE GAMERFAELG GGGSSSTFNA SFLQLPLLAA  180
ASAQAIPPKA QQDRSRLALQ QLPADMSSSV PTVRHNHQKG GEVVMGEISP ADAETVKAEI  240
MSHPQYPALL TAYLDCQKVG APPDVSDRLS AVAAKVDTLQ WKDQRRPQRA NPELDQFMEA  300
YCNMLVKYQE ELARPILEAA EFFNSVEKQL DSITDSSTRD GAGSSDVDDD QDASCPEELD  360
PCAEDKELKH HLLKKYGGYL GGLRQEFSKR KKKGKLPKEA RQKLLQWWEL HYRWPYPSET  420
EKIALAEATG LDQKQINNWF INQRKRHWKP TSEDMPPFAM VMEGCFHAPP ALYMDRPFMA  480
DGMYRLGP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}.
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:9869405}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00671PBMTransfer from GRMZM2G135447Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795146.11e-155homeobox protein knotted-1-like 12 isoform X3
SwissprotO650341e-105KNOSC_ORYSI; Homeobox protein knotted-1-like 12
SwissprotO804161e-105KNOSC_ORYSJ; Homeobox protein knotted-1-like 12
TrEMBLA0A0A9GAR11e-173A0A0A9GAR1_ARUDO; Uncharacterized protein
STRINGPavir.Ia00428.1.p1e-147(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40613873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-84KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Sato Y, et al.
    Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants.
    EMBO J., 1999. 18(4): p. 992-1002
    [PMID:10022841]
  2. Ito Y,Eiguchi M,Kurata N
    KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice.
    Genesis, 2001. 30(4): p. 231-8
    [PMID:11536429]
  3. Nagasaki H,Sakamoto T,Sato Y,Matsuoka M
    Functional analysis of the conserved domains of a rice KNOX homeodomain protein, OSH15.
    Plant Cell, 2001. 13(9): p. 2085-98
    [PMID:11549765]
  4. Postma-Haarsma AD, et al.
    Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice.
    Plant Mol. Biol., 2002. 48(4): p. 423-41
    [PMID:11908517]
  5. Kuijt SJ, et al.
    Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice.
    Plant Mol. Biol., 2004. 55(6): p. 781-96
    [PMID:15604716]
  6. Yin H, et al.
    SUI-family genes encode phosphatidylserine synthases and regulate stem development in rice.
    Planta, 2013. 237(1): p. 15-27
    [PMID:22956125]