PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00014.1.g06210.1.am.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

FAR1

Protein Properties

Length: 487aa MW: 54396.8 Da PI: 8.4427

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00014.1.g06210.1.am.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	24.5	9.2e-08	32	75	50	89
FAR1 50 kerrtraetrtgCkaklkvkkek....dgkwevtkleleHnHel 89 +er+ + C a+++v ++ +gkw+v+kl+ eHnHel Zjn_sc00014.1.g06210.1.am.mkhc 32 DEREDASAAAERCSAMMEVVATDgaggKGKWKVSKLVVEHNHEL 75 567778888999****99988888999************9 PP
2	FAR1	24.3	1e-07	102	166	2	48
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................t 48 fY eY+++vGF+ r+ ++++s + ge + ++f C ++++++k + Zjn_sc00014.1.g06210.1.am.mkhc 102 FYYEYGERVGFKARVGSNRRSVDYGEKIVQRFICWWGNYTNRRSKGkdsdegkeaeelveegddA 166 9*********************************8776666666555555555555555555443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.5E-5	31	75	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.2E-4	102	162	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence Send to blast
MAGEAAAPAP GPEASAAPAN PPEPLPQSGA GDEREDASAA AERCSAMMEV VATDGAGGKG 60 KWKVSKLVVE HNHELRVAPG EVTATVPALG MEFDSVEDAK GFYYEYGERV GFKARVGSNR 120 RSVDYGEKIV QRFICWWGNY TNRRSKGKDS DEGKEAEELV EEGDDAARKR KREPNKRMNR 180 MPVTKTTEVI EVEKGVGMAG TGNGSASRKS RNKDLVENDG EPVDMEETHD GTADDEDDEA 240 GSEDGVDEEV QMVKEKRGMG RPKKAIRKND ARQALVLREL GLKASQYDNE ERKKILGKYL 300 SKRRSRPTAA RPTKIASQQA LAERRKRGDG GRFLASECHQ PSQPSERRSK RLERQNLKKE 360 EEKAESKEEI TEAEPDPETE VSNSEPRRAT SKKNKNVDVR RQQQSPLDSN KKKKGRQGPP 420 EYEEIEIPLR VDPATVHPML HSSSVLVLSR DFLACHHLGR FKNQHLGLFN RLIYNHQLFI 480 LVHRCLR

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence Send to blast

MAGEAAAPAP GPEASAAPAN PPEPLPQSGA GDEREDASAA AERCSAMMEV VATDGAGGKG  60
KWKVSKLVVE HNHELRVAPG EVTATVPALG MEFDSVEDAK GFYYEYGERV GFKARVGSNR  120
RSVDYGEKIV QRFICWWGNY TNRRSKGKDS DEGKEAEELV EEGDDAARKR KREPNKRMNR  180
MPVTKTTEVI EVEKGVGMAG TGNGSASRKS RNKDLVENDG EPVDMEETHD GTADDEDDEA  240
GSEDGVDEEV QMVKEKRGMG RPKKAIRKND ARQALVLREL GLKASQYDNE ERKKILGKYL  300
SKRRSRPTAA RPTKIASQQA LAERRKRGDG GRFLASECHQ PSQPSERRSK RLERQNLKKE  360
EEKAESKEEI TEAEPDPETE VSNSEPRRAT SKKNKNVDVR RQQQSPLDSN KKKKGRQGPP  420
EYEEIEIPLR VDPATVHPML HSSSVLVLSR DFLACHHLGR FKNQHLGLFN RLIYNHQLFI  480
LVHRCLR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002463799.1	1e-118	protein FAR-RED IMPAIRED RESPONSE 1 isoform X2
TrEMBL	A0A1E5UM03	1e-116	A0A1E5UM03_9POAL; Uncharacterized protein
STRING	Sb01g006380.1	1e-118	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14833	13	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	4e-08	FAR1 family protein