PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00014.1.g09110.1.am.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

SBP

Protein Properties

Length: 536aa MW: 58128.8 Da PI: 4.992

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00014.1.g09110.1.am.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.4	1.5e-41	147	224	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegCeadl+ ak+yhrrhkvCe+h+ka++++v + qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ Zjn_sc00014.1.g09110.1.am.mkhc 147 ACQVEGCEADLTAAKDYHRRHKVCEMHAKASTAVVGNAVQRFCQQCSRFHLLEEFDEGKRSCRRRLAGHNRRRRKTRP 224 5**************************************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.3E-34	140	209	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.624	145	222	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	6.93E-39	146	226	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.5E-30	148	221	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 536 aa Download sequence Send to blast
MEAAGFGAQS SHLYGVGLSE LDLNRRDKRV FGWDLNEWSW DSERFIATPV PASVPNGLEL 60 NSSPSSSEEA EAEVARNDAV RGDPEKRKRV VVIDDDEAEH QDCGGALSLK IGGDAGGPRT 120 VESGNVNEEE RNGKKIKVQG GSSSGPACQV EGCEADLTAA KDYHRRHKVC EMHAKASTAV 180 VGNAVQRFCQ QCSRFHLLEE FDEGKRSCRR RLAGHNRRRR KTRPDISLGG AASIEDKLTI 240 FPYRTEARAC KVKDFDLNDT CNDMEGFENG HEVPPTPAFT AAGSPNCPSW MQQDSTQSPP 300 QTSGNSDSTS TQSLASSNGD AQDVCSEVSE LESIFESSRH ELADVDDVAR NQALEPDALG 360 PSTITPLHIA ASTSDAEDVL DALTDDPGLV GISAWKNARD DTGFTPEDYA RQRGNDAYLN 420 LVQKKIDKNT SGAHVVLGVP SSICPVGADD MKLGDVSLEI CSSMPMAAPM AKCHLCSHQA 480 RMYSRSSVRT FLYRPAMLMM MGVAVVCVCV GILLHTMPKV YAAPTFRWEL LERGAM

Sequence ? help Back to Top

Protein Sequence Length: 536 aa Download sequence Send to blast

MEAAGFGAQS SHLYGVGLSE LDLNRRDKRV FGWDLNEWSW DSERFIATPV PASVPNGLEL  60
NSSPSSSEEA EAEVARNDAV RGDPEKRKRV VVIDDDEAEH QDCGGALSLK IGGDAGGPRT  120
VESGNVNEEE RNGKKIKVQG GSSSGPACQV EGCEADLTAA KDYHRRHKVC EMHAKASTAV  180
VGNAVQRFCQ QCSRFHLLEE FDEGKRSCRR RLAGHNRRRR KTRPDISLGG AASIEDKLTI  240
FPYRTEARAC KVKDFDLNDT CNDMEGFENG HEVPPTPAFT AAGSPNCPSW MQQDSTQSPP  300
QTSGNSDSTS TQSLASSNGD AQDVCSEVSE LESIFESSRH ELADVDDVAR NQALEPDALG  360
PSTITPLHIA ASTSDAEDVL DALTDDPGLV GISAWKNARD DTGFTPEDYA RQRGNDAYLN  420
LVQKKIDKNT SGAHVVLGVP SSICPVGADD MKLGDVSLEI CSSMPMAAPM AKCHLCSHQA  480
RMYSRSSVRT FLYRPAMLMM MGVAVVCVCV GILLHTMPKV YAAPTFRWEL LERGAM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-31	141	221	4	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002466159.1	1e-112	squamosa promoter-binding-like protein 6
Swissprot	Q75LH6	1e-103	SPL6_ORYSJ; Squamosa promoter-binding-like protein 6
TrEMBL	C5WU18	1e-111	C5WU18_SORBI; Uncharacterized protein
STRING	Sb01g002530.1	1e-112	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1998	38	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	4e-37	squamosa promoter-binding protein-like 12

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]