PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00015.1.g01510.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 106aa    MW: 11950.1 Da    PI: 10.7815
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00015.1.g01510.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.43.8e-284088250
                                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                                  rien++ rqvtfskRr g++KKA+EL +LCdaev +++fsstg+lye++
  Zjn_sc00015.1.g01510.1.am.mk 40 RIENTTSRQVTFSKRRSGLFKKAKELAILCDAEVGLVVFSSTGRLYEFA 88
                                  9***********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.7E-393190IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.4553191IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-283191IPR002100Transcription factor, MADS-box
CDDcd002651.14E-373292No hitNo description
PROSITE patternPS0035003387IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-283353IPR002100Transcription factor, MADS-box
PfamPF003194.1E-274087IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-285368IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-286889IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MRLFPQHAAK EQPKKKAYPP NIYAVLGVEK MGRGKIVIQR IENTTSRQVT FSKRRSGLFK  60
KAKELAILCD AEVGLVVFSS TGRLYEFANT RFVLLVSSCF LAKLDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-183190160MEF2C
5f28_B2e-183190160MEF2C
5f28_C2e-183190160MEF2C
5f28_D2e-183190160MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional factor that targets the CArG motif 5'-C(A/T)TTAAAAAG-3' in the promoter of D14. Directly suppresses D14 expression to control the outgrowth of axillary buds. {ECO:0000269|PubMed:23463009}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820845.11e-32MADS-box transcription factor 23-like isoform X1
RefseqXP_025820847.11e-32MADS-box transcription factor 23-like isoform X3
SwissprotQ6Z6W24e-31MAD57_ORYSJ; MADS-box transcription factor 57
TrEMBLA0A3L6RL044e-32A0A3L6RL04_PANMI; MADS-box transcription factor 23-like
STRINGPOPTR_0001s29100.13e-32(Populus trichocarpa)
STRINGGRMZM2G044408_P013e-32(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.11e-32AGAMOUS-like 21
Publications ? help Back to Top
  1. Guo S, et al.
    The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14.
    Nat Commun, 2013. 4: p. 1566
    [PMID:23463009]
  2. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  3. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]
  4. Wang H, et al.
    A Signaling Cascade from miR444 to RDR1 in Rice Antiviral RNA Silencing Pathway.
    Plant Physiol., 2016. 170(4): p. 2365-77
    [PMID:26858364]