PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00015.1.g02540.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 245aa    MW: 28467.7 Da    PI: 9.4747
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00015.1.g02540.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.2e-18124173255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                    y+G+r ++ +g+W+AeIrdp++    +r++lg++ tae+Aa+a++a +++++g
  Zjn_sc00015.1.g02540.1.sm.mk 124 PYRGIRKRP-WGKWAAEIRDPRK---GARIWLGTYSTAEDAARAYDAEARRIRG 173
                                   59*******.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.86E-22124183IPR016177DNA-binding domain
PROSITE profilePS5103223.854124181IPR001471AP2/ERF domain
SMARTSM003804.1E-35124187IPR001471AP2/ERF domain
PfamPF008474.0E-11125173IPR001471AP2/ERF domain
PRINTSPR003672.9E-11125136IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-31125182IPR001471AP2/ERF domain
CDDcd000181.80E-29125182No hitNo description
PRINTSPR003672.9E-11147163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MSRASGPSIK LAVVEMKKKK NRRKKIDNHR EWGRRRSKKL YDDEEEEEEE EDFEAEFQAF  60
SKADECDDEF MAFCDFKSDS IDVSQPRKEN SWFTSSNNDA IISHNSSHDD EVSIVKSVKK  120
RKNPYRGIRK RPWGKWAAEI RDPRKGARIW LGTYSTAEDA ARAYDAEARR IRGNKATVNF  180
PDEVESRRQH VYGYEVRQIE IQEVSLLDET YSGRRKNRRP ALLSLGPGLR WVLQASGGHQ  240
LSPIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-22125186668ATERF1
3gcc_A2e-22125186668ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11735KKKNRRKKIDNHREWGRRR
23239GRRRSKKL
3115121KSVKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001353801.13e-49uncharacterized protein LOC100384698
TrEMBLA0A317Y6743e-48A0A317Y674_MAIZE; Ethylene-responsive transcription factor ERF071
STRINGGRMZM2G050851_P019e-49(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.14e-24ethylene-responsive element binding protein