PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00015.1.g03370.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 729aa    MW: 79635.7 Da    PI: 11.2702
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00015.1.g03370.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.54.8e-08163203954
                                   HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                    r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Zjn_sc00015.1.g03370.1.am.mk 163 ARMRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 203
                                   699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.085154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-13159216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-12159213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-13160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-5164203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.90E-5177208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MDFDMLMNST PEAQLELMNA MIQLEQQLTA FPDHGAMMVP STPPSPCVQQ APHHFASSVP  60
HMSAGTNGRA AYHDYQYYSQ QVTPPSSCNS SSSNRSEYTP AHQAPAAGTE GGGNGGDVAG  120
SSAMREMIFR VAALQPVNIE PEMVRPPKRR NVRISTDPQS VAARMRRERI SERIRILQRL  180
VPGGTKMDTA SMLDEAIHYV KFLKTQVQSL ERAAAASGRR PTAPPPEDNN GAVTYTSAGR  240
VNGQWTFVLA QYRAKPQLSH LRDATDGETW RRPGFRGRAP AVRLGPFLFT SYAGAQLQPL  300
CALQPRADCR RLAADRASLS TVNQFRPARD RFCRRPLACA RVKLLLMPRR LVSGCPRATT  360
LPSHVPGIFG ARRPGHLPAP VQKYFLLPIR PLSATAAVPV CECGKFHCRV LSSPTKSPAA  420
NLSCMGTLEY YTCRAIPCAK IWWWPRADSE RTEHAGLRLR LSLRSEGADK LRCGRDASQH  480
FIKPTGLQTK NSDVLVARDA RTLAPHDRGG EAVALDRTKP RRHTHRDRRA RGRRNVVATR  540
LNVPGRPAAG AMHHHACMHS AGKGHLSERA SERWIRGSTA REDRSQGTKA SFRSTSAQHA  600
GDETRHRTVP GRSPSVRTWT SLVRALAVRG GPAVDDVVVS PLLAEVDVHV TLAEHTSDSF  660
ACGCTAPRRG LHGRRAVPTG GHMARPARGA GGVGRSLWLT MTRVRSSDWT EGSVFVVCSS  720
LGRLNGTGT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144149RPPKRR
2163168RMRRER
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269731e-128KJ726973.1 Zea mays clone pUT3674 bHLH transcription factor (bHLH113) gene, partial cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31033682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.12e-35bHLH family protein