PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00015.1.g04470.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 329aa MW: 35972.3 Da PI: 10.972

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00015.1.g04470.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.9	1.4e-06	63	91	3	31
HHHHHHHHHHHHHHHHHHHHHHCTSCCC. CS HLH 3 rahnerErrRRdriNsafeeLrellPkas 31 ++h+ +E+ RR++iN+++ L++ +P +s Zjn_sc00015.1.g04470.1.am.mk 63 TNHSLAEKVRREKINERMKLLQDPVPGCS 91 79***********************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.7E-7	58	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.2E-7	63	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.86E-5	63	101	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MSLAERSWDG SSEGARRVHG FSRRERAQQR CRSPQDERAG REGGRGARKE EHIHVRARKG 60 KATNHSLAEK VRREKINERM KLLQDPVPGC SKFLSMKLAT VNPHLGIGVE RALTKDLLIR 120 FPGAPSSAPI GSSFSQEMMP KLPLLSESGV LERGVHGAGN SNVFRTAVQD NWHTDQISVK 180 NFCTSSISER LRDGPMFYAT VGFGGLLWAA TELDELPVHI AGVGGFAVPC EKITVRLASG 240 HRTYTTTISV SRRVGTRLAS RPGIHSTPVI TTLIMVIFTL SGSGILCRRL FLVIDRAVIR 300 YRLGGKRASL EATEDVPPPI SGDGLKAFS

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP33675	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	2e-21	bHLH family protein