PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00015.1.g04770.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 578aa    MW: 62045.6 Da    PI: 8.0588
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00015.1.g04770.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.29.2e-28244293150
                                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                        SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                                   krien++nrqvtfskRrng++KKA+ELSvLCd++va+++fs++g+l  +s
  Zjn_sc00015.1.g04770.1.am.mk 244 KRIENNTNRQVTFSKRRNGLIKKAYELSVLCDIDVALLMFSPSGRLSHFS 293
                                   79********************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.324236296IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-37236295IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-29237315IPR002100Transcription factor, MADS-box
CDDcd002654.34E-36237310No hitNo description
PRINTSPR004041.1E-24238258IPR002100Transcription factor, MADS-box
PROSITE patternPS003500238292IPR002100Transcription factor, MADS-box
PfamPF003191.6E-25245292IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-24258273IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-24273294IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MPGCLRCLPS CSPRLPGAID RQRSSSWLVT GLWACSGGCS IGSGKRPDAR QPAVGSRRFL  60
HWFAGSGVVG FGNMRVAALQ AIDHGLPGHD VVVVAKAPLC AFLSPELLKR RAVGDHRRGN  120
GEKERGGQPK STKRPWPAAR ALCPERLVQK SSGGPSPGRK RVHDVVSIFS PPFPPLGPLR  180
PVRCGSRTWW PRSFPSDPGR ASASPSDAPS LSPPCRVVHR RVGRRMCSRS SPIDAMGRVK  240
LPIKRIENNT NRQVTFSKRR NGLIKKAYEL SVLCDIDVAL LMFSPSGRLS HFSGRHGVED  300
VVLRYMNLSE HDRGDMLQRL KREGDVATQL AKSVYELFEP ADLATLGSTS EIDGCEKFQT  360
EVLARVVERK NYLLSSHMAP FDATATGVKD AAQMFVKPAE QVEGMAAFAG DVALWAADEG  420
SSPGHQMFGS SDPMIYLRDQ GMYDAPSQVA GLLGEPGAGG EADADAWREE YTCTELLSTL  480
IPATPFPLMQ VSIDRPFGSV ASGGGTTEHC LALGPDDQFL PMDEAMPMAV ATQEQVEASA  540
SCSYVPRDET GGTPPVMAYD STVAPEANVA GGSGTDLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P4e-19236324192Myocyte-specific enhancer factor 2B
1tqe_Q4e-19236324192Myocyte-specific enhancer factor 2B
1tqe_R4e-19236324192Myocyte-specific enhancer factor 2B
1tqe_S4e-19236324192Myocyte-specific enhancer factor 2B
6c9l_A4e-19236324192Myocyte-specific enhancer factor 2B
6c9l_B4e-19236324192Myocyte-specific enhancer factor 2B
6c9l_C4e-19236324192Myocyte-specific enhancer factor 2B
6c9l_D4e-19236324192Myocyte-specific enhancer factor 2B
6c9l_E4e-19236324192Myocyte-specific enhancer factor 2B
6c9l_F4e-19236324192Myocyte-specific enhancer factor 2B
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFM9565044e-90FM956504.1 Oryza sativa Japonica Group mRNA for MADS62 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025883256.11e-126agamous-like MADS-box protein AGL66
TrEMBLA0A3S6KAG01e-136A0A3S6KAG0_BAMML; MADS62
STRINGLPERR08G16000.11e-130(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49533360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.14e-42AGAMOUS-like 66