PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00015.1.g06810.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 291aa    MW: 31063.8 Da    PI: 6.9632
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00015.1.g06810.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.5e-09138185455
                                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                     +h+ +Er RR+ri +++  L+ l+P +    +k   Ka +L + ++Y++sLq
  Zjn_sc00015.1.g06810.1.am.mkhc 138 SHSLAERVRRERISERMRMLQALVPGC----DKVIGKALVLDEIINYVQSLQ 185
                                     8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-16132200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.39E-9132189No hitNo description
PROSITE profilePS5088815.053134184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-16134199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-6138185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-9140190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MADFSSHHSL LLEMPAALTN GHSTNLPGIL FSSQSHGDQA AAKASVASGG AAAMAAEESS  60
SAVVDTSPQG SASPMDRKRK ITEDSAALSS GHSKDCKEGK SKRGKRSSKE AKEKSATEDE  120
APKGYIHVRA RRGQATDSHS LAERVRRERI SERMRMLQAL VPGCDKVIGK ALVLDEIINY  180
VQSLQNQVEF LSMRIASMSP VLYGFGMDSD SLHDQAQKMG AMFQEALAMP GPVLSQVSPA  240
PSQAITDTTS TAAYSVQGQG TISFSQDSSS YLMQAVGEPR QELLNQLVFN N
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821629.11e-167transcription factor bHLH137-like isoform X1
SwissprotQ93W882e-53BH137_ARATH; Transcription factor bHLH137
TrEMBLA0A0A9NQF61e-170A0A0A9NQF6_ARUDO; Uncharacterized protein
STRINGPavir.Fa00144.1.p1e-168(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23583791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.21e-39bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]