PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00015.1.g07270.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 517aa    MW: 55608.5 Da    PI: 8.4006
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00015.1.g07270.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.51.4e-351882792102
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl+k+y++++d++++++isw+++g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+
  Zjn_sc00015.1.g07270.1.am.mk 188 FLTKTYQLVDDPAVNDIISWNDDGSAFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFA 259
                                   9*****************************************************************99.........**** PP

                                   ESXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkks 102
                                   ++ F++gkk+ll++i+r+k 
  Zjn_sc00015.1.g07270.1.am.mk 260 NDCFQRGKKRLLCDIHRRKV 279
                                   *****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.5E-38179272IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.0E-60184277IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.32E-34185277IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.7E-20188211IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.6E-32188277IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.7E-20226238IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340227251IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.7E-20239251IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MSPNLLRRVP ELQACRWLNG PLFAFSYPLS GPARPHLTLL SHPVVLVPAF PGSTSRSAPS  60
RPLLAQNAAI GTERGGDVYS TQPLVQLGHA GEGCGSRVDR DPLLSLRNSL PSSSLPPSLL  120
STPRKPRERS RSHHLRSYAS FPSPPRSMAA EQPAGEPSPP PLPSAHPPAP AEGAPSPLAS  180
QRSVPTPFLT KTYQLVDDPA VNDIISWNDD GSAFVVWRPA EFARDLLPKY FKHNNFSSFV  240
RQLNTYGFRK IVPDRWEFAN DCFQRGKKRL LCDIHRRKVT PSAAPTGAVT VAATPLPVAL  300
PVVSPACSGE EQVLSTSSSP EPPTRQQPSG SGSGGAASGD VGEENDRLRR ENARLARELA  360
QMKKLCNNIL LLMSKYAATQ QLDAAKAGNC SGESVEAAPP PPPPPPPSIL ELMPSCPGAP  420
AAAERDAGTT EEDEEEKMSA RLFGVSIGRK RMRGDGDSDS GEEPFRHAAE VKPEPMDAQP  480
PEQHRPHHGE EPQAWPIYRP TPVRAGSGSD RSGSNSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-2416728015131Heat shock factor protein 1
5d5v_B1e-2416728015131Heat shock factor protein 1
5d5v_D1e-2416728015131Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1447453GRKRMRG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659656.11e-149PREDICTED: heat stress transcription factor B-2b-like
SwissprotQ6Z9C81e-135HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLJ3MV031e-147J3MV03_ORYBR; Uncharacterized protein
STRINGOB08G29340.11e-148(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.16e-57HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]