PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00016.1.g00150.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 487aa    MW: 51579.8 Da    PI: 7.8651
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00016.1.g00150.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1048.2e-33207265260
                                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                                     +DgynWrKYGqK+vkgse+prsYY+Ct+++C++kkkvers  d++v++i+Y+g Hnh+k
  Zjn_sc00016.1.g00150.1.sm.mkhc 207 EDGYNWRKYGQKQVKGSENPRSYYKCTYHSCSMKKKVERSLADGRVTQIVYKGAHNHPK 265
                                     8********************************************************85 PP
2WRKY103.89.2e-33361419159
                                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                     ldDg++WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+ +d ++v++tYeg+Hnh+
  Zjn_sc00016.1.g00150.1.sm.mkhc 361 LDDGFRWRKYGQKVVKGNPNPRSYYKCTTPGCPVRKHVERACHDSRAVITTYEGKHNHD 419
                                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.773201266IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.2E-28203266IPR003657WRKY domain
SuperFamilySSF1182901.7E-25205266IPR003657WRKY domain
SMARTSM007741.3E-35206265IPR003657WRKY domain
PfamPF031061.5E-24207264IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.3E-36346421IPR003657WRKY domain
SuperFamilySSF1182903.92E-29353421IPR003657WRKY domain
PROSITE profilePS5081137.792356421IPR003657WRKY domain
SMARTSM007744.3E-38361420IPR003657WRKY domain
PfamPF031062.4E-25362419IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MASSTGSLEH GGGGFTFTPP QFITSFTDLL SGAAGDMLSG ESPRSMFPRA GGNGGVPKFK  60
SAQPPRLPIS PPPMSPSSYF AIPAGLSPAE LLDSPVLLTS ASNFLASPTT GAIPAQGFYW  120
KQAADAIAAS QSQSQSQQES RADAGFSDFS FFTAGPDAVP TAQTASFPSF TKDQQVEQSA  180
APKVTVSSIN KSGGGGGGDG GNKKQLEDGY NWRKYGQKQV KGSENPRSYY KCTYHSCSMK  240
KKVERSLADG RVTQIVYKGA HNHPKPLSTR RNSSSGGVGG AADQDHHQQQ AAPGTEHAVA  300
TPENSTVTFG DEDGCGSQRS DGDEPDAKRW KEDGENEGSS GGKPVREPRL VVQTLSDIDI  360
LDDGFRWRKY GQKVVKGNPN PRSYYKCTTP GCPVRKHVER ACHDSRAVIT TYEGKHNHDV  420
PVGRGAASAS RAPPAPGPTN HHQHPYTLEM LPTSSDAGYG AGGAFQQRAA VAKDEPRDDL  480
FVDSLLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-36206421877Probable WRKY transcription factor 4
2lex_A3e-36206421877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9570971e-179EU957097.1 Zea mays clone 1582655 WRKY53 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807559.10.0WRKY transcription factor WRKY24-like
SwissprotQ6B6R41e-116WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A1E5V1I90.0A0A1E5V1I9_9POAL; Putative WRKY transcription factor 26
STRINGSi021956m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85333448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.13e-91WRKY DNA-binding protein 26
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]