PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00016.1.g04770.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

M-type_MADS

Protein Properties

Length: 402aa MW: 42315.9 Da PI: 4.6512

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00016.1.g04770.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	52.7	5.3e-17	9	50	1	42
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 k+ienk++rq + kRr+++l KA+EL +LCd+ vav+++ + Zjn_sc00016.1.g04770.1.sm.mk 9 KFIENKRRRQSALRKRRATLLEKAKELATLCDVAVAVVMYCQ 50 79*************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.6E-13	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	15.825	1	48	IPR002100	Transcription factor, MADS-box
CDD	cd00266	5.80E-18	6	83	No hit	No description
SuperFamily	SSF55455	2.22E-16	6	85	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.3E-14	10	49	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MAPSPLKVKF IENKRRRQSA LRKRRATLLE KAKELATLCD VAVAVVMYCQ GEAEAVTWPS 60 AAETKTILER FVALPDVAKA NMNIEAFMQS RVEKVTKVLD NLKQGNCTHQ TYLVLNAIRN 120 GDRLNLDDLP PELVAAVKEA YAARMNLVAR HIRNPVAQAT AAVPLPPADA ATLAPAEPQL 180 PFMLPSLPET GYEAHRNVVA SYLNSLAAQA TSAAPPPPAD AAVLAPAPQE PFVLPPLSES 240 AYMAEMNLIA SYINNLAAQA TSAAPPPPAD AALVPGPQEP LVPPPLTMAP MAVTDEHAPL 300 VAPPLALEAV VADTQAPLVA PPLALEAVVA DAQAPLVAPP LAATPPVVPD TPAPSLQMDL 360 DGKPLPDSFL AEMVAAIMDD GSGSNVAPTD DDVQRIRKQH GL

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MAPSPLKVKF IENKRRRQSA LRKRRATLLE KAKELATLCD VAVAVVMYCQ GEAEAVTWPS  60
AAETKTILER FVALPDVAKA NMNIEAFMQS RVEKVTKVLD NLKQGNCTHQ TYLVLNAIRN  120
GDRLNLDDLP PELVAAVKEA YAARMNLVAR HIRNPVAQAT AAVPLPPADA ATLAPAEPQL  180
PFMLPSLPET GYEAHRNVVA SYLNSLAAQA TSAAPPPPAD AAVLAPAPQE PFVLPPLSES  240
AYMAEMNLIA SYINNLAAQA TSAAPPPPAD AALVPGPQEP LVPPPLTMAP MAVTDEHAPL  300
VAPPLALEAV VADTQAPLVA PPLALEAVVA DAQAPLVAPP LAATPPVVPD TPAPSLQMDL  360
DGKPLPDSFL AEMVAAIMDD GSGSNVAPTD DDVQRIRKQH GL

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP28156	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40210.1	4e-09	AGAMOUS-like 48