PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00016.1.g05330.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 1334aa MW: 145573 Da PI: 7.1428

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00016.1.g05330.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.2	1.9e-08	634	676	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++eE e++ + + +G++ +++I++ + ++t +c+++++k+ Zjn_sc00016.1.g05330.1.sm.mkhc 634 PWSKEEKEIFMEMLANFGKD-FSKISSFLT-HKTTADCVEFYFKH 676 8***************99.****9.*********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.48E-14	618	679	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.0E-7	625	678	IPR009057	Homeodomain-like
PROSITE profile	PS51293	14.157	630	681	IPR017884	SANT domain
SMART	SM00717	3.4E-8	631	679	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-6	633	676	IPR001005	SANT/Myb domain
PROSITE profile	PS51293	13.233	838	889	IPR017884	SANT domain
SMART	SM00717	8.3E-6	839	887	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.2E-9	841	889	IPR009057	Homeodomain-like
CDD	cd00167	2.08E-4	843	881	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1334 aa Download sequence Send to blast
MPPGYTPSRS DRYWVDDEGG GYKGFSRYGG GGGRRDGRDM RGSFRRAPFR SYGNDLSRNH 60 QEQPPPPPGP PLWRSPLRSF AVPCYDDTGD RENQPQVAPW RRRENRSEAA GDMRGTFRRS 120 PFRSYDNDIS KNHQEHPPSS PPRRSPLSSF AVPIYDPPGT LVDKGDRDNL LRVTPWRRRE 180 NRSEAAGAAG VGHVSAGQST HPAASEKVVS THPLAVTSPH GAEEEAPRKK ARLGWGQGLA 240 KYEKQKVQGP SEPAEAVSDG SLAGTGQGVA FPAPAPALCA SPVAVPPPPP LCTSVVDAPP 300 PPPVLCASLV AVPSPHSAQC SSPVALPSPA PVLLGFASSV TVPAPAAAHP PCTSPVAVPS 360 PAPAAAPEDK SCELTANTFL DSTQDAPGGD NQACNIEFPI KEPRELSPCP KIPVVQDASA 420 KDAEMMEIET AHNAKTASSE ESAACPEEQA HAAADVGPMK ISGGAKLQID VDNEKLEGHF 480 SIPRNSDAVI KERLVLHKSR LRFKQNALTF KFRTLRYLWK QDARLLWARK QRSKSNKRID 540 HSGRTLHFGS QRQRSINRSR LLMPGNSSIF PTPEISDIAN KMYSEFQIKC CRNYLKMPVL 600 IINEKEKECS RFVNKNGLVE DPIAVEKERV LINPWSKEEK EIFMEMLANF GKDFSKISSF 660 LTHKTTADCV EFYFKHHKSD GFREVKKLLD QHQQQKPTSN FLGAKSGKKW DREANAASLD 720 ILGVASAVAA QGLEYEKRVD KISAKSLIRN GSNVSFVARK SSRECLDIVS LHERESVAAD 780 VLAGICDNLS PEGMSSCITS SADPSQVINI TRMEHALTQE IDKTADDKDR LSDEECEVDP 840 ADWNDDEKSI FIEAMNNYGK DFAQISSCVK SKSYEQCKVF FSKARKSLGL DLIHQAGADV 900 SMPTSDTNGG SRDNEACAAE MDSAICSSQY FAKTEMDVCT TERAMQGPTY CIISKQTEGD 960 GSNDCDGLDV KTEEGENKAD KICTLGQKLF SDVGHRSTCG PIDINCPETT EKLEGLDDTV 1020 DQMHMQNNSA IISSREQLEA SIEGCSHPAL DTALVKAGNS GPPASIAAET DIKENVRQLS 1080 KMTGASSIST VSASSYQHSI PGDKLPAKPK QHVTPLTPKD LMPVQFSSVL PDPTSIRFQG 1140 IASITTPNFK DTGNKACNAL EAKDMNKYPS FKDQSQSGQH TSLFRNISGY TKHVATDSPI 1200 FSERNTSGTE STSQSDQFTV TKFQNGRSSS LGVPKTTDGI HWDRGHSEVS NGSLRPYSCN 1260 TCSEGNEQIK RPGDVKLFGQ ILSHQSSSQN SGSSYYQQPV MQAHQSDQKR MERFSDPHKR 1320 NGMEFISGFQ RPGK

Sequence ? help Back to Top

Protein Sequence Length: 1334 aa Download sequence Send to blast

MPPGYTPSRS DRYWVDDEGG GYKGFSRYGG GGGRRDGRDM RGSFRRAPFR SYGNDLSRNH  60
QEQPPPPPGP PLWRSPLRSF AVPCYDDTGD RENQPQVAPW RRRENRSEAA GDMRGTFRRS  120
PFRSYDNDIS KNHQEHPPSS PPRRSPLSSF AVPIYDPPGT LVDKGDRDNL LRVTPWRRRE  180
NRSEAAGAAG VGHVSAGQST HPAASEKVVS THPLAVTSPH GAEEEAPRKK ARLGWGQGLA  240
KYEKQKVQGP SEPAEAVSDG SLAGTGQGVA FPAPAPALCA SPVAVPPPPP LCTSVVDAPP  300
PPPVLCASLV AVPSPHSAQC SSPVALPSPA PVLLGFASSV TVPAPAAAHP PCTSPVAVPS  360
PAPAAAPEDK SCELTANTFL DSTQDAPGGD NQACNIEFPI KEPRELSPCP KIPVVQDASA  420
KDAEMMEIET AHNAKTASSE ESAACPEEQA HAAADVGPMK ISGGAKLQID VDNEKLEGHF  480
SIPRNSDAVI KERLVLHKSR LRFKQNALTF KFRTLRYLWK QDARLLWARK QRSKSNKRID  540
HSGRTLHFGS QRQRSINRSR LLMPGNSSIF PTPEISDIAN KMYSEFQIKC CRNYLKMPVL  600
IINEKEKECS RFVNKNGLVE DPIAVEKERV LINPWSKEEK EIFMEMLANF GKDFSKISSF  660
LTHKTTADCV EFYFKHHKSD GFREVKKLLD QHQQQKPTSN FLGAKSGKKW DREANAASLD  720
ILGVASAVAA QGLEYEKRVD KISAKSLIRN GSNVSFVARK SSRECLDIVS LHERESVAAD  780
VLAGICDNLS PEGMSSCITS SADPSQVINI TRMEHALTQE IDKTADDKDR LSDEECEVDP  840
ADWNDDEKSI FIEAMNNYGK DFAQISSCVK SKSYEQCKVF FSKARKSLGL DLIHQAGADV  900
SMPTSDTNGG SRDNEACAAE MDSAICSSQY FAKTEMDVCT TERAMQGPTY CIISKQTEGD  960
GSNDCDGLDV KTEEGENKAD KICTLGQKLF SDVGHRSTCG PIDINCPETT EKLEGLDDTV  1020
DQMHMQNNSA IISSREQLEA SIEGCSHPAL DTALVKAGNS GPPASIAAET DIKENVRQLS  1080
KMTGASSIST VSASSYQHSI PGDKLPAKPK QHVTPLTPKD LMPVQFSSVL PDPTSIRFQG  1140
IASITTPNFK DTGNKACNAL EAKDMNKYPS FKDQSQSGQH TSLFRNISGY TKHVATDSPI  1200
FSERNTSGTE STSQSDQFTV TKFQNGRSSS LGVPKTTDGI HWDRGHSEVS NGSLRPYSCN  1260
TCSEGNEQIK RPGDVKLFGQ ILSHQSSSQN SGSSYYQQPV MQAHQSDQKR MERFSDPHKR  1320
NGMEFISGFQ RPGK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	1e-14	601	683	12	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	1e-14	601	683	12	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021303528.1	0.0	uncharacterized protein LOC8071259
Refseq	XP_021303529.1	0.0	uncharacterized protein LOC8071259
TrEMBL	A0A3L6R8C8	0.0	A0A3L6R8C8_PANMI; Uncharacterized protein
STRING	Sb09g002290.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6299	35	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	4e-77	MYB family protein