PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00016.1.g05620.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WOX
Protein Properties Length: 263aa    MW: 28025.7 Da    PI: 7.8916
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00016.1.g05620.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.33.6e-201675357
                                  --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                      Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                  +R+++t+eql +Lee+++   r+p+a+++++++++l    +++ ++V++WFqN++a++++
  Zjn_sc00016.1.g05620.1.sm.mk 16 TRWCPTPEQLMILEEMYRGgLRTPNASQIQQITAHLaaygRIEGKNVFYWFQNHKARDRQ 75
                                  7*****************99*************************************996 PP
2Wus_type_Homeobox118.43.1e-381676464
             Wus_type_Homeobox  4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                                  tRW+PtpeQ++iLee+y+ GlrtPn+++iq+ita+L++yG+ie+kNVfyWFQN+kaR+rqk
  Zjn_sc00016.1.g05620.1.sm.mk 16 TRWCPTPEQLMILEEMYRGGLRTPNASQIQQITAHLAAYGRIEGKNVFYWFQNHKARDRQK 76
                                  8***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003893.5E-41380IPR001356Homeobox domain
SuperFamilySSF466891.28E-101479IPR009057Homeodomain-like
PfamPF000467.6E-181675IPR001356Homeobox domain
CDDcd000863.32E-51676No hitNo description
Gene3DG3DSA:1.10.10.606.7E-71775IPR009057Homeodomain-like
PROSITE profilePS500719.7662176IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MPSQQGGQQQ LPTGPTRWCP TPEQLMILEE MYRGGLRTPN ASQIQQITAH LAAYGRIEGK  60
NVFYWFQNHK ARDRQKLRRR LCMSHHLLTC AHYYTAAAAH HHIHGFLAPP VTVPVPPPAY  120
GCGAGGVFDQ AAAVAAGPLL APTSPNPAAA AAYGYYYPAT AFAAAPPASR CAGGATTPPS  180
PNQLFNYHQG GGGVAPADAL GRQEYSLGKL DNFGVSAALD NVDFDMVPAG FEVSAPPPPA  240
FCRQLKTLDL FPGGLKEEQH DVV
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0401841e-114BT040184.1 Zea mays full-length cDNA clone ZM_BFc0070F13 mRNA, complete cds.
GenBankKJ7269461e-114KJ726946.1 Zea mays clone pUT3492 HB transcription factor (HB82) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960326.15e-98putative WUSCHEL-related homeobox 2
SwissprotA2XZR32e-62WOX2_ORYSI; Putative WUSCHEL-related homeobox 2
TrEMBLA0A1E5VXX11e-103A0A1E5VXX1_9POAL; Putative WUSCHEL-related homeobox 2
STRINGSi022944m2e-97(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21773897
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.14e-41WOX family protein