PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00016.1.g06200.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 252aa MW: 28945 Da PI: 6.4059

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00016.1.g06200.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	223.7	9e-69	6	250	131	374
GRAS 131 aLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlq 209 LasR++gpp+lRiTg++ pe+g +++eetg+rLa++Ae ++v+f+++ +++++e++++e+++++++E+l++n+ ++ Zjn_sc00016.1.g06200.1.am.mk 6 HLASREGGPPKLRITGIDVPETGlhPCKTIEETGKRLAEYAELFNVSFDYHG-ISSQWENIRIEDINIDKDEVLIINCLHK 85 79*****************9999999********************.7*********************** PP GRAS 210 lhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290 + +l de+ +++s+rd+vL vk+++P+v+++ + ++s+ Fl rf e l y+s+lfd+l+++++r +e+ri +Er ll Zjn_sc00016.1.g06200.1.am.mk 86 MNNLGDETEDMDSARDRVLCNVKKMNPEVLIIGVVNGAYSSPFFLSRFREVLFYFSSLFDMLNTTVARSHEARILIERYLL 166 ***************************************************************************** PP GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371 g ++ nvvacegaer+er et+++Wr+r +aGFk++p+++ + k k + + + ++e+ ++l++gWk+r + ++S Zjn_sc00016.1.g06200.1.am.mk 167 GAAVLNVVACEGAERIERPETYKQWRRRSLKAGFKQLPVNQAILKRSTEETGKSYHEDFIIDEDGDWLLQGWKGRIMHALS 247 *****************************************9999999999888******************* PP GRAS 372 aWr 374 +W+ Zjn_sc00016.1.g06200.1.am.mk 248 SWK 250 8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	38.841	1	230	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.1E-66	6	250	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MRTAEHLASR EGGPPKLRIT GIDVPETGLH PCKTIEETGK RLAEYAELFN VSFDYHGISS 60 QWENIRIEDI NIDKDEVLII NCLHKMNNLG DETEDMDSAR DRVLCNVKKM NPEVLIIGVV 120 NGAYSSPFFL SRFREVLFYF SSLFDMLNTT VARSHEARIL IERYLLGAAV LNVVACEGAE 180 RIERPETYKQ WRRRSLKAGF KQLPVNQAIL KRSTEETGKS YHEDFIIDED GDWLLQGWKG 240 RIMHALSSWK PK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	6e-25	7	252	150	381	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002440450.2	1e-137	scarecrow-like protein 9
Swissprot	O80933	4e-93	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A1B6P5S1	1e-136	A0A1B6P5S1_SORBI; Uncharacterized protein
STRING	Pavir.Ca00616.1.p	1e-138	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1505	38	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	2e-95	GRAS family protein