PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00016.1.g06880.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 226aa    MW: 24984.8 Da    PI: 7.5066
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00016.1.g06880.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000125880123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  y+C+ C + F++   L  H+++H
  Zjn_sc00016.1.g06880.1.am.mk 58 YSCSFCQREFRSAQALGGHMNVH 80
                                  99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.9E-65585No hitNo description
PROSITE profilePS5015711.2615885IPR007087Zinc finger, C2H2
SMARTSM003550.00495880IPR015880Zinc finger, C2H2-like
PfamPF139122.1E-55881IPR007087Zinc finger, C2H2
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MAEQISKYWG SARSSSSTSP IIPSWATSYS SEPSWEEQAF ARDAAAHLGG CVWPPRSYSC  60
SFCQREFRSA QALGGHMNVH RRDRALLRQG SSPDDGQEAS VEQPKQRPSF SRAVSNPSPT  120
APPPSYLTSI IKESRNNLFM TMRVEATDQC DDVELRRMKR RRLDPPLPIF LQTTVSLVAT  180
QGVDHDAKVF VTWKRDEPAP VEADERHGAG ADAPSPQPQG AMDAAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-135380229superman protein
2l1o_A4e-135380229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158162KRRRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828169.17e-57uncharacterized protein LOC112903166
TrEMBLA0A0A9VPW54e-75A0A0A9VPW5_ARUDO; Uncharacterized protein
STRINGPavir.Ha00323.1.p3e-57(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78452943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.14e-25zinc-finger protein 10