PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00017.1.g01350.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 436aa MW: 46058 Da PI: 10.5624

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00017.1.g01350.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.7	7.6e-07	349	381	6	42
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKae 42 +++Er RR ri +++ +L+el+P+ + k ++K + Zjn_sc00017.1.g01350.1.sm.mkhc 349 SIAERERRTRISEKLRKLQELVPNmD-----KPPNKLS 381 689*********************55.....4455544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.03E-6	346	382	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.47E-5	347	383	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.4E-6	348	381	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
MPASFPLQRG TSDPTSLVEP GGPSLSFAPS PARLGSFKPT TTPRSSHLRQ HPPAPPPNLP 60 CFYASRAHQQ PKLTSSRPGA HRARLPGRRL VNFTPAQRPE GAVGMRRFMP GSGGVEPSSS 120 PSSGGQQRHH QHGERGGDTA AAGGLRYGGG DISLGHGHDG RLPQLGVDSA GRNEDRQQDG 180 SMDMLARHSS SPAGFFSNLV MDNGYPSSKG AGGSGAEPHH HPSKASNVNS RKINFTRQQQ 240 QGAASGHLSQ ISELDGGAFP PGLSAGGRSS GESSGAASRS FSGGFSIVGP WEESREIIAT 300 LGAYDPQFSG AMAGSALEMA GMDRYLQLQQ DQVPFKVRAK RGCATHPRSI AERERRTRIS 360 EKLRKLQELV PNMDKPPNKL STANQRNVPD GTANEHSGHV GPCSGAHQGS AERAADSEAR 420 AREVYLLQKA MTVATY

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

MPASFPLQRG TSDPTSLVEP GGPSLSFAPS PARLGSFKPT TTPRSSHLRQ HPPAPPPNLP  60
CFYASRAHQQ PKLTSSRPGA HRARLPGRRL VNFTPAQRPE GAVGMRRFMP GSGGVEPSSS  120
PSSGGQQRHH QHGERGGDTA AAGGLRYGGG DISLGHGHDG RLPQLGVDSA GRNEDRQQDG  180
SMDMLARHSS SPAGFFSNLV MDNGYPSSKG AGGSGAEPHH HPSKASNVNS RKINFTRQQQ  240
QGAASGHLSQ ISELDGGAFP PGLSAGGRSS GESSGAASRS FSGGFSIVGP WEESREIIAT  300
LGAYDPQFSG AMAGSALEMA GMDRYLQLQQ DQVPFKVRAK RGCATHPRSI AERERRTRIS  360
EKLRKLQELV PNMDKPPNKL STANQRNVPD GTANEHSGHV GPCSGAHQGS AERAADSEAR  420
AREVYLLQKA MTVATY

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU954725	1e-107	EU954725.1 Zea mays clone 1479278 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808991.1	1e-98	transcription factor bHLH128-like
TrEMBL	A0A1E5USQ6	5e-99	A0A1E5USQ6_9POAL; Transcription factor bHLH128
STRING	Pavir.Aa01423.1.p	4e-96	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11531	31	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	5e-27	bHLH family protein