PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00017.1.g02310.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 463aa    MW: 50249.4 Da    PI: 8.739
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00017.1.g02310.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.6e-18148195148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WT+eEd++l+ +++q+G g+W++ +++ g++R++k+c++rw +yl
  Zjn_sc00017.1.g02310.1.am.mk 148 KGPWTPEEDQKLLAYIEQHGHGCWRSLPAKAGLRRCGKSCRLRWTNYL 195
                                   79********************************************97 PP
2Myb_DNA-binding42.31.7e-13201292148
                                   TSSS-HHHHHHHHHHHHHTTTT.............................................-HHHHHHHHTTTS- CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.............................................tWktIartmgkgRt 36 
                                   rg++T +E++ +++++++lG+                                              +W++Ia +++ +Rt
  Zjn_sc00017.1.g02310.1.am.mk 201 RGKFTLQEEQTIIQLHALLGNSlavphhpcqgagplpppacrpaamltcsvpsllpladrpvlvsfpSWSAIATHLP-KRT 280
                                   89*******************9*******************************************************.*** PP

                                   HHHHHHHHHHHT CS
               Myb_DNA-binding  37 lkqcksrwqkyl 48 
                                   ++++k++w+++l
  Zjn_sc00017.1.g02310.1.am.mk 281 DNEIKNYWNTHL 292
                                   *********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-25140198IPR009057Homeodomain-like
PROSITE profilePS5129425.045143199IPR017930Myb domain
SMARTSM007171.6E-15147197IPR001005SANT/Myb domain
PfamPF002491.2E-16148195IPR001005SANT/Myb domain
SuperFamilySSF466899.8E-23149222IPR009057Homeodomain-like
CDDcd001671.79E-12150195No hitNo description
PROSITE profilePS500908.258196292IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.5E-22199221IPR009057Homeodomain-like
SMARTSM007172.6E-11200294IPR001005SANT/Myb domain
PfamPF002494.1E-11201292IPR001005SANT/Myb domain
SuperFamilySSF466891.27E-7267301IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.5E-22268296IPR009057Homeodomain-like
CDDcd001671.97E-6269292No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MVARCAPAGY VANPGTADQR VEAHEYARGE YDGCDHESRR AARTGRAPNA VSICWLRWEV  60
RYAVLRLSRR GRRETAHRTD LNGVNGAGAA DWWAKPRASQ GRGRTETQED SRPTLGRHYP  120
SNLTPRSPAG CYRMGRSPCC EKEAGLKKGP WTPEEDQKLL AYIEQHGHGC WRSLPAKAGL  180
RRCGKSCRLR WTNYLRPDIK RGKFTLQEEQ TIIQLHALLG NSLAVPHHPC QGAGPLPPPA  240
CRPAAMLTCS VPSLLPLADR PVLVSFPSWS AIATHLPKRT DNEIKNYWNT HLKKRLAKMG  300
IDPATHKPLP DAPAGASSGA RCRAAAHLSH TAHGLESPTS TLSFSESAAL FATSAPHDGH  360
GAARQPPVLQ APQSYVDAFG EQHTQQQDGF LARAFPDCSV AGAEQGFAAT SADPSAGEQE  420
EDKGYWNSIL NMVNSSMSTS SSSLISETVT EQAAYLLAAA AEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-191462965108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794241e-120HF679424.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB18 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952890.11e-126transcription factor MYB16
RefseqXP_025817649.11e-126transcription factor MYB106-like
SwissprotQ9LXF19e-78MYB16_ARATH; Transcription factor MYB16
TrEMBLA0A2S3GQC21e-125A0A2S3GQC2_9POAL; Uncharacterized protein
TrEMBLK3YUA51e-125K3YUA5_SETIT; Uncharacterized protein
STRINGSi017851m1e-125(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.19e-75myb domain protein 16
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]
  4. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]