PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00017.1.g03230.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 241aa MW: 26436.1 Da PI: 8.0849

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00017.1.g03230.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	32.5	2.5e-10	105	151	1	49
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk 49 lppGf+F P+de+lv ++L++k+++ +++ ++i++v +++++Pw+L++ Zjn_sc00017.1.g03230.1.am.mk 105 LPPGFHFFPSDEDLVIHFLRRKAANVPCRP-DIIPTV-LHRYDPWELNA 151 79***********************999.778876.99*****73 PP
2	NAM	44.4	5.4e-14	152	205	74	128
NAM 74 knratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + r+ sg W+ g d++v++ +g vglkkt++f +g+ kg kt+Wvmhey+l Zjn_sc00017.1.g03230.1.am.mk 152 QGRTSPSGCWNPIGADETVTC-SGCSVGLKKTFIFCTGEPFKGFKTNWVMHEYHL 205 568889*************.9999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.62E-34	99	212	IPR003441	NAC domain
PROSITE profile	PS51005	13.367	105	235	IPR003441	NAC domain
Pfam	PF02365	1.6E-15	106	205	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MRKANPKGGG WLGLETGWGS DEGREAADYR LLNLDKNLPS VLIGSHHLSQ LVLIDMGTNV 60 ICNRLQSLST LLDLHVSPSL CPSPPYKYHS VARTDHIRMG GATNLPPGFH FFPSDEDLVI 120 HFLRRKAANV PCRPDIIPTV LHRYDPWELN AQGRTSPSGC WNPIGADETV TCSGCSVGLK 180 KTFIFCTGEP FKGFKTNWVM HEYHLLDGGG YNASGGSTSG VQQLGDMPSL RIKLRRASEL 240 P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-21	104	214	16	151	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-21	104	214	16	151	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-21	104	214	16	151	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-21	104	214	16	151	NO APICAL MERISTEM PROTEIN
3swm_A	1e-21	104	214	19	154	NAC domain-containing protein 19
3swm_B	1e-21	104	214	19	154	NAC domain-containing protein 19
3swm_C	1e-21	104	214	19	154	NAC domain-containing protein 19
3swm_D	1e-21	104	214	19	154	NAC domain-containing protein 19
3swp_A	1e-21	104	214	19	154	NAC domain-containing protein 19
3swp_B	1e-21	104	214	19	154	NAC domain-containing protein 19
3swp_C	1e-21	104	214	19	154	NAC domain-containing protein 19
3swp_D	1e-21	104	214	19	154	NAC domain-containing protein 19
4dul_A	1e-21	104	214	16	151	NAC domain-containing protein 19
4dul_B	1e-21	104	214	16	151	NAC domain-containing protein 19

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3667	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	3e-27	NAC domain containing protein 25