PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00017.1.g04260.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 674aa    MW: 73695.8 Da    PI: 6.6813
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00017.1.g04260.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.94.3e-352583502103
                                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEE CS
                    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiwe 80 
                                     Fl+k+y+++ +++l+ +isw + gnsfvv+d+++fa++vLp++Fkh+nf+SFvRQLn+YgF+kv++++         we
  Zjn_sc00017.1.g04260.1.sm.mkhc 258 FLSKTYDLVTEPALDGVISWGAAGNSFVVWDPSTFARDVLPHHFKHNNFSSFVRQLNTYGFRKVHTDR---------WE 327
                                     9****************************************************************999.........** PP

                                     EEESXXXXXXXXXXXXXXXXXXX CS
                    HSF_DNA-bind  81 FkhksFkkgkkellekikrkkse 103
                                     F+h+ F +++k+ll++i r++s+
  Zjn_sc00017.1.g04260.1.sm.mkhc 328 FAHEDFLRDNKHLLKRIVRRRSS 350
                                     *******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.27E-33254347IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.8E-37254347IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-55254347IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-16258281IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.4E-31258347IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-16296308IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340297321IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-16309321IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
HRTAVTTDGL VTPSLRAGSL QADPTTAPAT RAPSQLSLAA TDTTRPTRTP SQKYPVLSSP  60
PSKTHRRSGI LARAFHPRYF YRPLPSAAPA HRLAVWPAAA LPSGRNPGRA PLRSLRTPAP  120
PRVGVPPHAE LTRTGAVHAD RRQPRRTVCR FHPKPINAPP AHPSPPVSSS DTRAHLQPSH  180
AAAMNPDRAR SDAPDVPYPD ASASMEALLV PKLEAEAALP LSLPGPFVPL DQVMPAEPVP  240
DPPRPLEALL QGPQLPPFLS KTYDLVTEPA LDGVISWGAA GNSFVVWDPS TFARDVLPHH  300
FKHNNFSSFV RQLNTYGFRK VHTDRWEFAH EDFLRDNKHL LKRIVRRRSS PTQQSSIQPA  360
SSGDSSLDPE LHTLRREKIA LLQEVARLKQ EQSQTIEHMS TLNKRLDTAE DRQKQMISFL  420
AKLLQNPAFV RQLKLHREQK EIDSGRMKRK FLKHVPHGSI ESGESSSLHT GEGGSHFPAS  480
SHMAVQDDIA DLQNFLLGDD DFNFGMNAEN IGLEGVEEPE DIGALVQGFN AQDALGSGAE  540
LLEMPTSSAP LGQDPTIGRH KGKNVLCPGL DATSSESDCL GSLSENMGVL SATMLETAPD  600
DEPMWSMDTS AALQSSCSGS SQQPYSSLAS DPYLMEIANK PEKFWDLDFQ PLDEGDLQLD  660
KCAIDDPTLQ QQQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-2425035011123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813039.10.0heat stress transcription factor A-3-like
SwissprotQ6H6Q70.0HSFA3_ORYSJ; Heat stress transcription factor A-3
TrEMBLA0A3L6QHX90.0A0A3L6QHX9_PANMI; Heat stress transcription factor A-3-like
STRINGSi016943m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90103041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.12e-70heat shock transcription factor A3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]
  3. Mittal D,Madhyastha DA,Grover A
    Gene expression analysis in response to low and high temperature and oxidative stresses in rice: combination of stresses evokes different transcriptional changes as against stresses applied individually.
    Plant Sci., 2012. 197: p. 102-13
    [PMID:23116677]