PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00017.1.g05880.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 137aa    MW: 15414.4 Da    PI: 6.5182
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00017.1.g05880.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.93.7e-1368136163
                                   EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-T CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltk 63 
                                   f k+lt sdv+ ++rl++p++ ae++       +++ +   l +ed++g+ W ++++++++s++yv+t+
  Zjn_sc00017.1.g05880.1.am.mk  68 FSKILTLSDVGMLNRLIIPRQEAEKYfpmssiAISEDGASFLNFEDSTGKLWHFRYSFWRSSQSYVFTR 136
                                   8899**************************99666667778*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-2058136IPR015300DNA-binding pseudobarrel domain
CDDcd100175.66E-1366136No hitNo description
SuperFamilySSF1019363.92E-1366136IPR015300DNA-binding pseudobarrel domain
PfamPF023622.9E-1068136IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MDVQQKGKAI LHQSPFVLAV NPTLSPLFGR SLESRSAQAF PSGLSDGHGA SSQHEASQKE  60
GIEMEFMFSK ILTLSDVGML NRLIIPRQEA EKYFPMSSIA ISEDGASFLN FEDSTGKLWH  120
FRYSFWRSSQ SYVFTRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-23651361181DNA-binding protein RAV1
5os9_A1e-2363136374B3 domain-containing transcription factor NGA1
5os9_B1e-2363136374B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017614810.16e-28PREDICTED: B3 domain-containing transcription factor NGA1-like
SwissprotQ7F9W24e-26Y4814_ORYSJ; B3 domain-containing protein Os04g0581400
TrEMBLA0A2S3GNZ74e-32A0A2S3GNZ7_9POAL; Uncharacterized protein
STRINGPavir.Ea01754.1.p5e-33(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16167813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.18e-26B3 family protein
Publications ? help Back to Top
  1. Je BI, et al.
    RAV-Like1 maintains brassinosteroid homeostasis via the coordinated activation of BRI1 and biosynthetic genes in rice.
    Plant Cell, 2010. 22(6): p. 1777-91
    [PMID:20581303]