PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00018.1.g02270.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 423aa MW: 44896 Da PI: 10.0709

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00018.1.g02270.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104	8.4e-33	147	205	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k++er+++d k v++tYeg+H he Zjn_sc00018.1.g02270.1.sm.mkhc 147 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCSVRKHIERASNDLKSVITTYEGKHSHE 205 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.7E-36	132	207	IPR003657	WRKY domain
SuperFamily	SSF118290	1.83E-28	139	207	IPR003657	WRKY domain
PROSITE profile	PS50811	36.575	142	207	IPR003657	WRKY domain
SMART	SM00774	1.7E-36	147	206	IPR003657	WRKY domain
Pfam	PF03106	5.8E-25	148	204	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MSAQAAKATF QKEFPLHPNV FNAFEKSNSH GGLAERRAAR AGFSVLKIDT SQVAHGGASI 60 LKSQAAVDVS STLSIEEEER ATHGTVSEDC DGDEDETESK RRKMDSLGAA TITSAATTSA 120 VDMGAVASRS VRQPRVVVQT TSEVDILDDG YRWRKYGQKV VKGNPNPRSY YKCTHPGCSV 180 RKHIERASND LKSVITTYEG KHSHEVPAAR NSGQAGSGSG SAPSATQACH RRQEPAHGNF 240 AHFGGTAPFG SLVLPPRGHL GPAEGNFHFG MVPPGMAIPM ASLGSLAATK MIQSSSAVQG 300 YQGSMMPGEL KVDSVSRSSL TTGIAAPTAY QQIMRRPPYG PHMSGSDAGE RAAQSGGRRA 360 AQKWRRARSA AREQASEQER RRPARMSVAG PKRAGEEKQR GSGVAAAGTD ELARMEVAGK 420 EEQ

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MSAQAAKATF QKEFPLHPNV FNAFEKSNSH GGLAERRAAR AGFSVLKIDT SQVAHGGASI  60
LKSQAAVDVS STLSIEEEER ATHGTVSEDC DGDEDETESK RRKMDSLGAA TITSAATTSA  120
VDMGAVASRS VRQPRVVVQT TSEVDILDDG YRWRKYGQKV VKGNPNPRSY YKCTHPGCSV  180
RKHIERASND LKSVITTYEG KHSHEVPAAR NSGQAGSGSG SAPSATQACH RRQEPAHGNF  240
AHFGGTAPFG SLVLPPRGHL GPAEGNFHFG MVPPGMAIPM ASLGSLAATK MIQSSSAVQG  300
YQGSMMPGEL KVDSVSRSSL TTGIAAPTAY QQIMRRPPYG PHMSGSDAGE RAAQSGGRRA  360
AQKWRRARSA AREQASEQER RRPARMSVAG PKRAGEEKQR GSGVAAAGTD ELARMEVAGK  420
EEQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-38	138	208	8	78	Probable WRKY transcription factor 4
2lex_A	3e-38	138	208	8	78	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269\|PubMed:21316593}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025802032.1	1e-142	LOW QUALITY PROTEIN: probable WRKY transcription factor 2
Swissprot	Q9FG77	1e-52	WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBL	A0A1E5WJ69	1e-151	A0A1E5WJ69_9POAL; Putative WRKY transcription factor 2
STRING	Pavir.J40119.1.p	1e-143	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12338	22	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56270.1	3e-40	WRKY DNA-binding protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ueda M, et al. Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote. Genes Dev., 2017. 31(6): p. 617-627 [PMID:28404632] Lei R, et al. Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function. Plant J., 2017. 91(6): p. 962-976 [PMID:28635025]