PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00018.1.g03570.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 256aa    MW: 27650.8 Da    PI: 6.8708
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00018.1.g03570.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.4e-21122172256
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                                    y+GVr+++ +g+W+AeIrdp+    r +r +lg+f+taeeAa+a+++a+++++g+
  Zjn_sc00018.1.g03570.1.sm.mk 122 VYRGVRQRP-WGKWAAEIRDPR----RaARKWLGTFDTAEEAARAYDRAALEFRGA 172
                                   69*******.**********82....48*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.304122179IPR001471AP2/ERF domain
SMARTSM003801.6E-35122185IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-23122180IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.0E-32122180IPR001471AP2/ERF domain
PfamPF008471.0E-14122171IPR001471AP2/ERF domain
CDDcd000181.56E-32123181No hitNo description
PRINTSPR003671.2E-11123134IPR001471AP2/ERF domain
PRINTSPR003671.2E-11145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MTKKLVHAIA TSKRGPGAQI DNQRKQVSDY ADGRTMISHE QEHGIIVAAL RHVLSGYSTP  60
PPEVVTVASG EACGVCGIDG CLGCDFFTDD KAGSPELTQG VSYGTVTGGA EKRRRRRTRN  120
NVYRGVRQRP WGKWAAEIRD PRRAARKWLG TFDTAEEAAR AYDRAALEFR GARAKLNFPH  180
QEGPFLGHHG GDLIAATTET LTPPSPCSGD AEESAPGVWQ LGGPDGPGDE LWDGLRDVMK  240
MDDAEFWSLA SFSGAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-21123179663ATERF1
3gcc_A1e-21123179663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111116KRRRRR
2112117RRRRRT
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0671958e-68AK067195.1 Oryza sativa Japonica Group cDNA clone:J013098P10, full insert sequence.
GenBankAP0058918e-68AP005891.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:B1045B05.
GenBankAP0149658e-68AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126178e-68CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
GenBankEU6229348e-68EU622934.1 Oryza sativa Indica Group EATB (EATB) mRNA, complete cds.
GenBankKP2128998e-68KP212899.1 Oryza sativa Indica Group cultivar IR64-Sub1 AP2 domain containing protein (EATB) gene, complete cds.
GenBankKP2129008e-68KP212900.1 Oryza sativa Indica Group cultivar PS-2 AP2 domain containing protein (EATB) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460334.11e-87ethylene-responsive transcription factor ERF109
SwissprotQ9SZ062e-28EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A1E5WBD28e-91A0A1E5WBD2_9POAL; Uncharacterized protein
STRINGOPUNC09G11150.14e-87(Oryza punctata)
STRINGSb02g026630.15e-87(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.14e-24redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]