PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00018.1.g03740.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 619aa    MW: 67474.7 Da    PI: 9.2918
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00018.1.g03740.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1118.4e-35241172103
                                   HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEE CS
                  HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweF 81 
                                   Fl+k+y++++d+++++++sw  ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+kv  e+         weF
  Zjn_sc00018.1.g03740.1.am.mk  24 FLTKTYQLVDDPATDHIVSWGdDRVSTFVVWRPPEFARDILPNYFKHNNFSSFVRQLNTYGFRKVVPER---------WEF 95 
                                   9********************6667*****************************************999.........*** PP

                                   EESXXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  82 khksFkkgkkellekikrkkse 103
                                   +++ F+kg+k+ll++i+r+k++
  Zjn_sc00018.1.g03740.1.am.mk  96 ANEFFRKGEKQLLCEIHRRKTS 117
                                   *******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.8E-3615109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.9E-5820114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.35E-3021114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.8E-3024114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.1E-192447IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.1E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.1E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MERVERCGNW ECDTGAQKAV PAPFLTKTYQ LVDDPATDHI VSWGDDRVST FVVWRPPEFA  60
RDILPNYFKH NNFSSFVRQL NTYGFRKVVP ERWEFANEFF RKGEKQLLCE IHRRKTSSAS  120
TASPSPSPFF APAHFPLFHH PGVQHQHHQF MADEGVVGAG VGFPHPHWRE PHAATPVATR  180
LLALNGPAPS PLPATEGSGP ARAATAAVLM EENERLRRSN TALLQELAHM RKLYNDIIYF  240
VQNHGLGLQA RKKSSAAAAL NNSGGSTTSS SSLTIADEPS PHTPPQQHCA AAAPTKLFGV  300
QLTAAPTGAG TKRPPSPDDE RPPSSPATKP RLALGSADLS LSTPSGASSP SSIFSFFLEA  360
AAAAAARCTL KIQPAASLAV CVGCRRMGGW CFGCNACDVM CVSSVRFCRG RPCSSQPAVI  420
EHHPATARGV HTIFRKSKRD PDLLPFPRNF AFVYPKPTSS LRAHHGLVLP LPFLLQPAAE  480
TMLWHTMSRW WRVPFPRFSE AEDGTINGRD SKAVAPDPSE QTTKFFHSNP HLIIIRDWRV  540
GSRPRIHAGR SGILLRLAIC AGEAIFDRAG PAGAATVSES QLNAAYAEPE RQCTVAACCP  600
GAVQRMEASN QAFLTKMFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-212011717123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2411901e-140AK241190.1 Oryza sativa Japonica Group cDNA, clone: J065120N14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611002.11e-140heat stress transcription factor B-4c
SwissprotQ67U941e-141HFB4C_ORYSJ; Heat stress transcription factor B-4c
TrEMBLA0A0E0M1Z41e-148A0A0E0M1Z4_ORYPU; Uncharacterized protein
STRINGOPUNC09G11010.11e-149(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.14e-81heat shock transcription factor B4