PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00018.1.g04770.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 399aa    MW: 43390.4 Da    PI: 4.9957
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00018.1.g04770.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-19136185255
                             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                     +y+G+r+++ +g+W+AeIrdps+     r++lg++ taeeAa+a++a ++k++g
  Zjn_sc00018.1.g04770.1.sm.mkhc 136 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTYNTAEEAARAYDAEARKIRG 185
                                     69*******.**********965...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.933136193IPR001471AP2/ERF domain
CDDcd000187.81E-32136194No hitNo description
SMARTSM003804.4E-37136199IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-22136194IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-32136194IPR001471AP2/ERF domain
PfamPF008476.7E-12137185IPR001471AP2/ERF domain
PRINTSPR003672.7E-11137148IPR001471AP2/ERF domain
PRINTSPR003672.7E-11159175IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MCGGAILSGF IRPSGGAAAK KKKQQSRRVT ADVLWPELGG KAGEENFEAD FRQFERGLSE  60
DDVDAAGDED EDDVVQLEVP PSPEWFVFGG AAKAAPVVPR STVERRKIGG HDVITPKSSH  120
HDGPAAKAAK RSRKNQYRGI RQRPWGKWAA EIRDPSKGVR VWLGTYNTAE EAARAYDAEA  180
RKIRGKKAKV NFPDEGLNGQ KSIQKPSAAN QTKVAPPSMT CANEAFGHPS NGDNDLFAMF  240
AFSDTKVPVK PAETAAFLPP LKPLVPTERF GANMLSDQSS NSYGSSDFGW DDETMMPDYT  300
SVLAPNNSVP AYAELVYLQD PPSKRMRNNY GVAVPVPKGN GVPNLTQDMS GFDPEMRVLQ  360
MPYVDSSSDV SMDSLLQNDG TQDGDLWSLD ELLMEAGAY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-20135193160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-19136193563ATERF1
3gcc_A1e-19136193563ATERF1
5wx9_A3e-191361951474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800946.11e-172ethylene-responsive transcription factor 1-like
TrEMBLA0A0A9P8100.0A0A0A9P810_ARUDO; Uncharacterized protein
STRINGPavir.J01991.1.p1e-171(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112003142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.21e-35related to AP2 12