PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00018.1.g06940.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 557aa MW: 61342.1 Da PI: 9.5337

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00018.1.g06940.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	109.3	5.7e-34	398	478	3	83
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssas 71 ++drhski T++g RdRR+Rls+++a+ fF+Lqd+LGfdk+skt++WLl+q+kpai+ l + s Zjn_sc00018.1.g06940.1.am.mk 398 FRTDRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRLSEPthrgsgsgdaamS----- 473 689*********************************************************9995555443222111..... PP TCP 72 eceaesssssas 83 + +++ Zjn_sc00018.1.g06940.1.am.mk 474 -S------PMSA 478 .1......1111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	34.922	399	457	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	5.7E-33	399	479	IPR005333	Transcription factor, TCP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000032	Biological Process	regulation of secondary shoot formation
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence Send to blast
MRRRSLMASS CSPHGRPADA NTAMDELSLG VIRWQAHGLG DGTHQRQVQG RRRDRVRCES 60 LAERRAVVTF PSRDRVPLVH RPVRVRLVWT LGRRRSQQWR HAETERAKAR SNPKIGTPRN 120 RSTMLSLPPL LCTQFCATRL AVRDSTEAAP HAAMESHATA APAVKMIQRM VRAMSRFEGQ 180 QGTTALAPSC AAMPSIDRDE QCVCVRARTW PLLLVSLQLI CRTGGGGGLA GRGCSPCPTC 240 TRQWRWTRHS LDPKICSSTC ERSCERGSGR GQEIAAAAAQ ELARSRSPLS LGSLQMLPYH 300 NPHHFGISQE QPHPNPATAG FPMGPPVVHP DQQHYDHHFF PGHAHYFNSE TLEAVLRPPR 360 AASEREVVGV MPVPQGASRN SVAGAGGQGN ARARKRPFRT DRHSKIRTAQ GVRDRRMRLS 420 LDVARDFFAL QDRLGFDKAS KTVDWLLTQS KPAIDRLSEP THRGSGSGDA AMSSPMSAEI 480 VKETAAAGSG KGSVEKTASR NSSFMDHSCE LDRLVSAAPV LGEYYYEFGE MMGSNEGEGD 540 DDGEYDEDGD FLDNMQY

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence Send to blast

MRRRSLMASS CSPHGRPADA NTAMDELSLG VIRWQAHGLG DGTHQRQVQG RRRDRVRCES  60
LAERRAVVTF PSRDRVPLVH RPVRVRLVWT LGRRRSQQWR HAETERAKAR SNPKIGTPRN  120
RSTMLSLPPL LCTQFCATRL AVRDSTEAAP HAAMESHATA APAVKMIQRM VRAMSRFEGQ  180
QGTTALAPSC AAMPSIDRDE QCVCVRARTW PLLLVSLQLI CRTGGGGGLA GRGCSPCPTC  240
TRQWRWTRHS LDPKICSSTC ERSCERGSGR GQEIAAAAAQ ELARSRSPLS LGSLQMLPYH  300
NPHHFGISQE QPHPNPATAG FPMGPPVVHP DQQHYDHHFF PGHAHYFNSE TLEAVLRPPR  360
AASEREVVGV MPVPQGASRN SVAGAGGQGN ARARKRPFRT DRHSKIRTAQ GVRDRRMRLS  420
LDVARDFFAL QDRLGFDKAS KTVDWLLTQS KPAIDRLSEP THRGSGSGDA AMSSPMSAEI  480
VKETAAAGSG KGSVEKTASR NSSFMDHSCE LDRLVSAAPV LGEYYYEFGE MMGSNEGEGD  540
DDGEYDEDGD FLDNMQY

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM578620	2e-85	KM578620.1 Paspalum malacophyllum isolate TK058-6 retarded palea 1 protein (rep1) gene, partial cds.
GenBank	KM578621	2e-85	KM578621.1 Paspalum malacophyllum isolate TK058-1 retarded palea 1 protein (rep1) gene, partial cds.
GenBank	KM578622	2e-85	KM578622.1 Paspalum malacophyllum isolate TK058-7 retarded palea 1 protein (rep1) gene, partial cds.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4052	31	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18550.1	5e-25	TCP family protein