PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00018.1.g07260.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 1040aa    MW: 110973 Da    PI: 10.2408
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00018.1.g07260.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.94.9e-29318377159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                   ++Dgy+WrKYGqK+ ++++ pr+Y+rC++a +Cpvkkkv+rsaed +v++ tYegeHnh+
  Zjn_sc00018.1.g07260.1.am.mk 318 VKDGYQWRKYGQKVTRDNPSPRAYFRCAFApSCPVKKKVQRSAEDSSVLVATYEGEHNHP 377
                                   58***************************99****************************8 PP
2HLH13.40.000147098071255
                                   HHHHHHHHHHHHHCTSCCC..........................................................TTS- CS
                           HLH  12 RRdriNsafeeLrellPkas.......................................................kapskK 37 
                                   RR+ri +++  L+el+P+a                                                        ++    
  Zjn_sc00018.1.g07260.1.am.mk 709 RRERIAERMKALQELVPNANkvgaraghiyphvglldrrrapsataragsrpfflleflpmsrarrlsrrttrgfNPFFSA 789
                                   9*****************888*************************************************99999777777 PP

                                   STCHHHHHHHHHHHHHHH CS
                           HLH  38 lsKaeiLekAveYIksLq 55 
                                    +Ka++L + ++Y+k Lq
  Zjn_sc00018.1.g07260.1.am.mk 790 TDKATMLDEIIDYVKFLQ 807
                                   89*************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.44E-24314379IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.3E-28316379IPR003657WRKY domain
SMARTSM007746.5E-35318378IPR003657WRKY domain
PfamPF031068.8E-24319377IPR003657WRKY domain
PROSITE profilePS5081127.026320379IPR003657WRKY domain
PROSITE profilePS508889.47697806IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.35E-7709725IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-9710726IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.35E-7783816IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-9788814IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1040 aa     Download sequence    Send to blast
MTCLKSTGFT RTPPRLNESL LPRSVSAGPS PIGDRRQLSL PLWDRLRKQW TFRPRNRAYT  60
RDDPAARAGS RITFGYLLVR LSSTSAARLK MTRVMTLRGM TRTPLTSARV PRRVRRVGTE  120
RSQQSHDPPL YSTTPAVGSQ ASKIPSARGN SIPLHRETTM LLMDSARHAG YSPVSLDLNV  180
GLPSMPPPRR DMETEADTQP DRPVGGRAAA PMTDEEANKT LLEAKLTEAS EENRRLHEMI  240
AYLHANTASP GLPSPAAGCK KRIRRESPDP SNSCDGGNGD RNDPESARLG VIDEASCERI  300
KVIRVCTRIN PVDTALAVKD GYQWRKYGQK VTRDNPSPRA YFRCAFAPSC PVKKKVQRSA  360
EDSSVLVATY EGEHNHPSPT SAGELRSCAT RSGSVPCSIS IGSAGPTITL DLTKNGARAL  420
DADEKPEPTE LNKLCKEIAS PEFRTALPAC SLQLLPPRLV LTLASETLPA GGRAMQPTAR  480
EMQAMAAAGQ ISLDDLRAAV GGAGGAHDEF LDQMLGAGLP QSAWPDLSGG KAPEGMQQQQ  540
FGGLYDESAL LASRLREHQI SGGPAGAEEK RMVLQQLADL RQGHHGMLLP LSLGSGGSGG  600
DVQALAANST GGEAGGVFTG SFAGSLQHHQ QQQRFQPHTQ QTVPMASQGF GGGGAPQQQA  660
GIGAAGGGAP APPRQRRVRA RRGQATDPHS IAERVSHSPN RAMRFRPLRR ERIAERMKAL  720
QELVPNANKV GARAGHIYPH VGLLDRRRAP SATARAGSRP FFLLEFLPMS RARRLSRRTT  780
RGFNPFFSAT DKATMLDEII DYVKFLQLQV LSMSRLGGAG AVAPLVADMS SEVTCYFSPA  840
YFPLSLDANF SRTRKNPRDV NELFSAAADG YCHAPTATAP RVPHAEMPLL PSRNHRLSLH  900
LSVHAQGRGS GGGAAPAAES EGLAATEQQV AKLMEEDMGT AMQYLQGKGL CLMPVSLASA  960
ISSATCHMRP GSLQAGLGAA AAHHMAAAMR LPPSMNGDAV PASPSLSVLT AQSAMANGVG  1020
ADGEASQQQQ AKDAASVSKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-193183791474WRKY transcription factor 1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126171e-72CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66603552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.11e-39WRKY DNA-binding protein 18