PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00019.1.g01930.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 228aa    MW: 23722.8 Da    PI: 6.7148
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00019.1.g01930.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260933.4e-292105199
                          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvy 74 
                                     +C++C+vlr++C++ Cvl p +     ++ q++++ +v+k+FG++ ++  l+a+p ++r+++++sl+yeA+ r+ +Pv+
  Zjn_sc00019.1.g01930.1.sm.mkhc   2 SCNGCRVLRKACSDACVLQPSIewidgAQPQANATVFVAKFFGRAGLVASLAAVPLQHRPALFRSLLYEACGRTINPVS 80 
                                     6*********************9999888899*********************************************** PP

                          DUF260  75 Gavgvilklqqqleqlkaelallke 99 
                                     Ga+g+++ ++++l+q++ae++l++e
  Zjn_sc00019.1.g01930.1.sm.mkhc  81 GAIGLMWMGHWDLCQAAAEAVLRGE 105
                                     *******************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.7861107IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-232101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MSCNGCRVLR KACSDACVLQ PSIEWIDGAQ PQANATVFVA KFFGRAGLVA SLAAVPLQHR  60
PALFRSLLYE ACGRTINPVS GAIGLMWMGH WDLCQAAAEA VLRGESLRAL SAIPATFTDR  120
DMAGLYGDVG VAASNSPEHS SSAPSRKRRA NNGQYVFAGK VDGCYQPPAA GLPQSCELNL  180
CLTPASPLAG DRRGSGGGAS DEYSATTTCE DAGGEAEAGA PTLLNLFR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2880021e-135AK288002.1 Oryza sativa Japonica Group cDNA, clone: J075110B01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982442.11e-112LOB domain-containing protein 37
TrEMBLA0A3L6TGQ71e-113A0A3L6TGQ7_PANMI; LOB domain-containing protein 37-like
STRINGSi037275m1e-111(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84503041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.12e-53LOB domain-containing protein 37