PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00019.1.g02800.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 184aa    MW: 19378.6 Da    PI: 7.6997
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00019.1.g02800.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.16.7e-083312255
                                    HHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksLq 55
                                     L+el+P++      K +Ka++L +A+eY+ksLq
  Zjn_sc00019.1.g02800.1.sm.mkhc  3 ALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 31
                                    69******8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.074130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-11138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-11247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.11E-8335No hitNo description
PfamPF000103.8E-5331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MRALQELIPH CNKTDKASML DEAIEYLKSL QLQVQMMWMG SGVTAPPVMF PGVHKYLPRM  60
GVGMGAAAAA AMPRMPFMAP QLVNPVPLSP GYLGHMPAVG ITEPYAHYLG TVNHLQPTLT  120
QHFAQGVDYY PLGTKAVQQN PALHVPGAGG SMTAAAPGVL PPESAPNKGP GTTPSCSSLL  180
VPDN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9566459e-67EU956645.1 Zea mays clone 1569257 PIL5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982350.11e-85transcription factor PIF1 isoform X1
TrEMBLA0A368SH293e-84A0A368SH29_SETIT; Uncharacterized protein
STRINGPavir.Ia01219.1.p4e-85(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31073677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.15e-22phytochrome interacting factor 3-like 6