PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00019.1.g02830.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LSD

Protein Properties

Length: 101aa MW: 10582.4 Da PI: 8.2878

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00019.1.g02830.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	40	6.5e-13	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCrt+L YP GApsV+Ca+C+++ Zjn_sc00019.1.g02830.1.sm.mkhc 7 CRGCRTVLLYPQGAPSVCCAVCQAI 31 9**********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	4.0E-12	4	34	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	4.2E-11	7	31	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	1.7E-6	43	57	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009814	Biological Process	defense response, incompatible interaction
GO:0034052	Biological Process	positive regulation of plant-type hypersensitive response
GO:2000121	Biological Process	regulation of removal of superoxide radicals

Sequence ? help Back to Top
Protein Sequence Length: 101 aa Download sequence Send to blast
MHNQIVCRGC RTVLLYPQGA PSVCCAVCQA ITTVPPPGLE MAHLICGGCR TLLMYTRNGD 60 TPKTQPQNVT VVVENPMTVD EKGKLVSNVA VGVTAGSAGK N

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004982348.1	8e-34	protein LOL3
Swissprot	Q6ASS2	3e-30	LOL3_ORYSJ; Protein LOL3
TrEMBL	A0A0E0KGN6	4e-50	A0A0E0KGN6_ORYPU; Uncharacterized protein
STRING	OMERI03G23730.1	3e-37	(Oryza meridionalis)
STRING	OMERI12G13090.1	4e-37	(Oryza meridionalis)
STRING	ORUFI12G20660.2	5e-37	(Oryza rufipogon)
STRING	OPUNC12G16710.1	4e-37	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1347	38	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.1	3e-25	lsd one like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]