PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00019.1.g03820.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

FAR1

Protein Properties

Length: 230aa MW: 26063.8 Da PI: 9.0936

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00019.1.g03820.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86.1	5.5e-27	12	114	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvk 69 f+n YA+++GF +r+s ++ r+g++++r+fvC keg+r+ ++k+ + k rrt+a+tr+gCka+++vk Zjn_sc00019.1.g03820.1.am.mk 12 FFNGYAHRMGFGTRISVMHGLPRDGTVMSRQFVCAKEGFRTYQSKNelaradagtgdedSGKGRRTHAVTRVGCKAMIRVK 92 9******************************************9*******99999*************** PP FAR1 70 kekdgkwevtkleleHnHelap 91 k+++g+w vtkle+ nH+l p Zjn_sc00019.1.g03820.1.am.mk 93 KQDNGRWTVTKLETAYNHPLIP 114 *****************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.0E-25	12	114	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MEFDDDEDAW TFFNGYAHRM GFGTRISVMH GLPRDGTVMS RQFVCAKEGF RTYQSKNELA 60 RADAGTGDED SGKGRRTHAV TRVGCKAMIR VKKQDNGRWT VTKLETAYNH PLIPDQSHCL 120 RPHKPLSECG KQKPFGGHKT VAHPWQLSRH QHPLRRLCIA QVYVKWLQEL EVLLKAAPPG 180 AGDLLLAACA HIVFLNQHHY LLLEPCSTIH AVFGARSNHR SDELFHFSMI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015631605.1	2e-68	protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_025879795.1	4e-69	protein FAR1-RELATED SEQUENCE 9 isoform X2
TrEMBL	A0A1E5WFJ1	4e-73	A0A1E5WFJ1_9POAL; Protein FAR1-RELATED SEQUENCE 5
STRING	OGLUM03G28710.1	4e-71	(Oryza glumipatula)
STRING	ONIVA03G29050.1	2e-70	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9031	33	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-27	FAR1-related sequence 5