PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00020.1.g01320.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 372aa    MW: 38002.9 Da    PI: 8.166
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00020.1.g01320.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.45e-20123171355
                           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae+Aa+a++a +++l+g
  Zjn_sc00020.1.g01320.1.am.mk 123 YRGVRRRP-WGKWAAEIRDPK----KaARVWLGTFATAEDAARAYDAVALRLRG 171
                                   9*******.**********94....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.5E-32122180IPR001471AP2/ERF domain
SMARTSM003801.4E-36122185IPR001471AP2/ERF domain
PROSITE profilePS5103225.014122179IPR001471AP2/ERF domain
PfamPF008472.6E-13122171IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-22122180IPR016177DNA-binding domain
PRINTSPR003672.6E-11123134IPR001471AP2/ERF domain
CDDcd000186.42E-26130181No hitNo description
PRINTSPR003672.6E-11145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MWTPPFLAPA PATLSEDPEE AAIVAALTQV LAGGRSTTTT PMPPASLCPT TAMVCGPWHV  60
GQAACQGEPS ASASVGQVSV QDRTEPSQDL VMPASNQAPT TPTCPKETEP GAAVATAPIR  120
RNYRGVRRRP WGKWAAEIRD PKKAARVWLG TFATAEDAAR AYDAVALRLR GSRAKLNFPE  180
DTASSRRRPP APVGSRQPSS SACDSVAGRR LSCPEVVHHR RGAPDDFTGC SNGRFLSSWS  240
IGGQASLSPV CSAAPGAPLL CGSQGMGISE TDAILVTLEQ PVALAPPTPD AAHPAGTAPS  300
TACFKILMTL ELASPPTSPD PNRPVGAVVR GCSGRVRCAA AHGLSGQGVA AAGGFGGGVA  360
DGAWPTGAQE LG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-23121179463ATERF1
3gcc_A4e-23121179463ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126109e-50CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2S3GQ772e-59A0A2S3GQ77_9POAL; Uncharacterized protein
STRINGSi019270m4e-54(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150381120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.17e-24related to AP2 6