PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00020.1.g02010.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 372aa    MW: 41852.2 Da    PI: 5.8266
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00020.1.g02010.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind102.82.9e-32701622103
                                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEE CS
                    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiwe 80 
                                     Fl+k+++++++++l+ +isw + gns+vv+d+++fa++vLp +Fkh+nf+ FvRQLn+YgF+kv+ ++         we
  Zjn_sc00020.1.g02010.1.sm.mkhc  70 FLSKTFDLVSEPALDGVISWGAAGNSIVVWDPSTFARDVLPYHFKHNNFSTFVRQLNTYGFRKVHADR---------WE 139
                                     9****************************************************************999.........** PP

                                     EEESXXXXXXXXXXXXXXXXXXX CS
                    HSF_DNA-bind  81 FkhksFkkgkkellekikrkkse 103
                                     F+h+ F +++k+ll++i r++s+
  Zjn_sc00020.1.g02010.1.sm.mkhc 140 FAHEDFLRDSKHLLKRIVRRRSS 162
                                     ******************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.13E-3266159IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.0E-5166159IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.8E-3566159IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.5E-167093IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.9E-2970159IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-16108120IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-16121133IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MNRDRANAPE YPTSSASMEA LLEPKLEDEA ALPLSSPGPL VPLDQLMPGP GLDPPRPLEA  60
LLQGPQLPPF LSKTFDLVSE PALDGVISWG AAGNSIVVWD PSTFARDVLP YHFKHNNFST  120
FVRQLNTYGF RKVHADRWEF AHEDFLRDSK HLLKRIVRRR SSTQQSSIQP VSSSGESSLD  180
PEHTLRREKT ALLQEVTRLK QEHRQTIEHM STLNQRLESA DDRQKQMISF LAKLLQNPTF  240
VRQLKLQREQ KEIDSTRVKR KYLKHVPHGS IESAACLASL GENMGLLSGT MLEPAANDEQ  300
LWGIDTSAAL QSSCSGSSQQ AYSSLASDPY LMEIVNKPEK FWDPDFQPLD EGDLPLDKCA  360
IDDPTLQYQK QQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-246216311124Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813039.11e-154heat stress transcription factor A-3-like
SwissprotQ6H6Q71e-139HSFA3_ORYSJ; Heat stress transcription factor A-3
TrEMBLA0A3L6QHX91e-154A0A3L6QHX9_PANMI; Heat stress transcription factor A-3-like
STRINGPavir.Ab01320.1.p1e-148(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90103041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.14e-65heat shock transcription factor A3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]
  3. Mittal D,Madhyastha DA,Grover A
    Gene expression analysis in response to low and high temperature and oxidative stresses in rice: combination of stresses evokes different transcriptional changes as against stresses applied individually.
    Plant Sci., 2012. 197: p. 102-13
    [PMID:23116677]