PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00020.1.g02380.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 154aa    MW: 17757.3 Da    PI: 9.4475
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00020.1.g02380.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-052850123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  y C+ C+k F r  nL+ H r H
  Zjn_sc00020.1.g02380.1.sm.mk 28 YICEVCHKGFQRDQNLQLHRRGH 50
                                  89*******************88 PP
2zf-C2H212.90.00034104126123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kC  C+k +  +s+ k H + +
  Zjn_sc00020.1.g02380.1.sm.mk 104 WKCDRCSKKYAVQSDWKAHTKIC 126
                                   58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.05E-72750No hitNo description
Gene3DG3DSA:3.30.160.605.2E-62750IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0382850IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.7412850IPR007087Zinc finger, C2H2
PROSITE patternPS0002803050IPR007087Zinc finger, C2H2
SMARTSM00355476999IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.1E-592125IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.05E-799124No hitNo description
SMARTSM00355230104124IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MVHDIHLADP DVEIVALSPK TLLATNRYIC EVCHKGFQRD QNLQLHRRGH NLPWKLKQRS  60
STEAKKKVYV CPELTCPHHD ASRALGDLTG IKKHYSRKHG EKKWKCDRCS KKYAVQSDWK  120
AHTKICGTKE YRCDCGTIFS SYQTVSSADV VQYQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-20100140343Zinc finger protein JACKDAW
5b3h_F5e-20100140343Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1848811e-156KF184881.1 Saccharum hybrid cultivar R570 clone BAC 172K24 complete sequence.
GenBankKF1849121e-156KF184912.1 Saccharum hybrid cultivar R570 clone BAC 254D06 complete sequence.
GenBankKF1849461e-156KF184946.1 Saccharum hybrid cultivar R570 clone BAC 166F02 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818794.12e-95protein indeterminate-domain 2-like
SwissprotQ8GYC12e-84IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
SwissprotQ9SCQ61e-84IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A059Q1N69e-97A0A059Q1N6_9POAL; Zinc finger protein
STRINGPavir.Aa01904.1.p1e-94(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114253240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.16e-87indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]