PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00020.1.g03690.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 279aa    MW: 29234.1 Da    PI: 5.6414
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00020.1.g03690.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH444e-1472116655
                                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                       +ErrRR+r+N+ +  Lr+++P+      +K++Ka+i + A+eYI +Lq
  Zjn_sc00020.1.g03690.1.sm.mkhc  72 VVMERRRRRRLNDTLYALRSVVPNI-----TKMDKASIIKDAIEYILQLQ 116
                                     579*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.89766115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-1871138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-1572121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-1672131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.6E-1272116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.04E-682113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MDSPTGDESF ACLWDCFDSE GLESLYIGDG GAGSGDGWHH EGYSSSPDVG SNHGSPSAAA  60
STGPGGGGSS NVVMERRRRR RLNDTLYALR SVVPNITKMD KASIIKDAIE YILQLQQLER  120
QLLAEISLLE SASAHPLLVG TPSSSISAAG MADSFCDGLA VSPTKKMRTA PCPGSTAPPT  180
PPLPVDALEV RVSGAGDKVL VLSVACRHRR DAVAKVCRAL EGLRLRVIAA NVTSAAGTVT  240
HTALVQKEEL RQSEMKELVE AAIAQVDCVV GSPLSTMSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17481ERRRRRRL
27580RRRRRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0667036e-41BT066703.1 Zea mays full-length cDNA clone ZM_BFb0053N17 mRNA, complete cds.
GenBankEU9556206e-41EU955620.1 Zea mays clone 1539722 DNA binding like mRNA, complete cds.
GenBankKJ7280266e-41KJ728026.1 Zea mays clone pUT6163 bHLH transcription factor (bHLH108) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452037.12e-90transcription factor bHLH35 isoform X1
TrEMBLC5Y1316e-89C5Y131_SORBI; Uncharacterized protein
STRINGSb04g017390.19e-90(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-29bHLH family protein