PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00021.1.g01720.1.am.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 932aa MW: 101515 Da PI: 5.2331

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00021.1.g01720.1.am.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.3	1.2e-12	710	755	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h + Er+RR+++N++f++Lr+llP++ K +K ++L A Y+k+L+ Zjn_sc00021.1.g01720.1.am.mkhc 710 HMMSERKRREKLNDSFQTLRSLLPPC-----SKKDKTTVLINAASYLKKLE 755 7799*******************9.....699************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05879	2.5E-76	2	296	IPR008803	RHD3/Sey1
SuperFamily	SSF47459	1.31E-16	702	771	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.205	705	754	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.32E-10	710	753	No hit	No description
Pfam	PF00010	3.9E-10	710	755	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.0E-16	710	772	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.4E-13	711	760	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 932 aa Download sequence Send to blast
MEAIYFDEGV RNSKRQQLES KLVQLVNPAY QSLLGYLRTR TLEAFKESFD KALENEGFAV 60 AARDCIQDFL EKFDKGSEDA AIQQVKWDPS KTKDKLKRDM EAHVASVRAT KLSELCAKFK 120 AQLTKALAEP VEALLDSASD DTWPAIRKLL QCETKASVSG LESALSTFEL DEATEKELLT 180 KLENHGRNVV VSKAKEEAGR ILIRMKDRFS TLFSRDADSM PRVWTGNEDI KAITKMAWSS 240 SMKLLSTLAA IRLDEGNDNI ENTLSLALVD TAKPGTADRS IQSFDPLASS SWESEANKRN 300 DNWLPPPWAL AAMAILGFNE FMTLLRPFDG CPNCRVFACN DTQLPAILSL STKFVPPVMN 360 ILKKLAEEGQ APAAPQREME LQPKSPRNGS SYSNVTFAGS SSISCGVLPW RSHHGIGAVQ 420 TGGVFPSRRA QERTGPWPLI RPDRSIRGAS SPPIATFDRS DFHDGFAFLA ELAPPLALRP 480 LSLLLWCGLD LQLPSANDVP GLRGAADDDP FWPALADCAA SFLAVDDIDI TGPPSDKVVG 540 GMVMDMDASC FMPEEQHERT YSSSPPSSKR SLSMDDSAGT ISSPFSFALD GADASLADAG 600 VFDPSAGDDA AIMRAMMAVL SSASPSSSES SSPPQSQETI SSIQQAAAVY PYGENNNNNN 660 YYNGHVAVGS ITSLAVAPEQ ATSLTNSLGG GRQEQERVAA NNNNSSQVYH MMSERKRREK 720 LNDSFQTLRS LLPPCSKKDK TTVLINAASY LKKLESEVSE LEEKNAKLER HVPRDDGGAA 780 ASVAAQRRAK IQISRAASDA DQMNLTVMMM VECDIVDLVL HVLERLRWMA GVSVLSVDAD 840 TYSRQVLLKA IASIKLQITV RALLALHYVA ANSYKWHFEQ SKRIDISVLR DLMQDGDAWN 900 EASFHEAMKK VVHEATSSAA AGASAAPQVA TA

Sequence ? help Back to Top

Protein Sequence Length: 932 aa Download sequence Send to blast

MEAIYFDEGV RNSKRQQLES KLVQLVNPAY QSLLGYLRTR TLEAFKESFD KALENEGFAV  60
AARDCIQDFL EKFDKGSEDA AIQQVKWDPS KTKDKLKRDM EAHVASVRAT KLSELCAKFK  120
AQLTKALAEP VEALLDSASD DTWPAIRKLL QCETKASVSG LESALSTFEL DEATEKELLT  180
KLENHGRNVV VSKAKEEAGR ILIRMKDRFS TLFSRDADSM PRVWTGNEDI KAITKMAWSS  240
SMKLLSTLAA IRLDEGNDNI ENTLSLALVD TAKPGTADRS IQSFDPLASS SWESEANKRN  300
DNWLPPPWAL AAMAILGFNE FMTLLRPFDG CPNCRVFACN DTQLPAILSL STKFVPPVMN  360
ILKKLAEEGQ APAAPQREME LQPKSPRNGS SYSNVTFAGS SSISCGVLPW RSHHGIGAVQ  420
TGGVFPSRRA QERTGPWPLI RPDRSIRGAS SPPIATFDRS DFHDGFAFLA ELAPPLALRP  480
LSLLLWCGLD LQLPSANDVP GLRGAADDDP FWPALADCAA SFLAVDDIDI TGPPSDKVVG  540
GMVMDMDASC FMPEEQHERT YSSSPPSSKR SLSMDDSAGT ISSPFSFALD GADASLADAG  600
VFDPSAGDDA AIMRAMMAVL SSASPSSSES SSPPQSQETI SSIQQAAAVY PYGENNNNNN  660
YYNGHVAVGS ITSLAVAPEQ ATSLTNSLGG GRQEQERVAA NNNNSSQVYH MMSERKRREK  720
LNDSFQTLRS LLPPCSKKDK TTVLINAASY LKKLESEVSE LEEKNAKLER HVPRDDGGAA  780
ASVAAQRRAK IQISRAASDA DQMNLTVMMM VECDIVDLVL HVLERLRWMA GVSVLSVDAD  840
TYSRQVLLKA IASIKLQITV RALLALHYVA ANSYKWHFEQ SKRIDISVLR DLMQDGDAWN  900
EASFHEAMKK VVHEATSSAA AGASAAPQVA TA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	713	718	ERKRRE
2	714	719	RKRREK

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10174	31	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	4e-15	bHLH family protein