PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00022.1.g02260.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 205aa    MW: 22076.5 Da    PI: 4.7896
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00022.1.g02260.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.22.6e-1021442347
                                  -HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47
                                  +W++Ia++++ gRt++++k++w+++
  Zjn_sc00022.1.g02260.1.sm.mk 21 RWSKIAARLP-GRTDNEIKNHWNTH 44
                                  7*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.351149IPR017930Myb domain
SuperFamilySSF466896.01E-92054IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-132159IPR009057Homeodomain-like
PfamPF002495.4E-82144IPR001005SANT/Myb domain
CDDcd001675.93E-82145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MQLAGRWLVP PKLTAPLVFC RWSKIAARLP GRTDNEIKNH WNTHIKKKLR KMGIDPVTHR  60
PLSPSQSGEP LSQQRQQRQD PPHEREKGRD EPKASSEGPA GSDQDDESEE TPVSGAQPQV  120
AAAPSPASTA ATVSPSCSSS GSASVATPGA DVAAWPDPID LFEVDGMMDL DWAAILSGCG  180
DDGAGMKVDL FDHYPGDGFD EQVWR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9646201e-44EU964620.1 Zea mays clone 280394 odorant 1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953828.11e-69protein ODORANT1
TrEMBLA0A1E5VPT03e-69A0A1E5VPT0_9POAL; Protein ODORANT1
TrEMBLA0A3L6RR415e-69A0A3L6RR41_PANMI; Protein ODORANT1-like
STRINGSi020225m4e-69(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16600.12e-23myb domain protein 43