PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00022.1.g05410.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 235aa    MW: 25989.4 Da    PI: 10.1933
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00022.1.g05410.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.29.4e-143478147
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                    r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  Zjn_sc00022.1.g05410.1.sm.mkhc 34 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 78
                                    789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.76E-172884IPR009057Homeodomain-like
PROSITE profilePS5129415.4082983IPR017930Myb domain
TIGRFAMsTIGR015578.6E-193281IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.5E-73284IPR009057Homeodomain-like
SMARTSM007175.3E-113381IPR001005SANT/Myb domain
PfamPF002491.6E-113478IPR001005SANT/Myb domain
CDDcd001671.00E-83679No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MVSAGTPPAQ PDAAAAGDDG SKKVRKPYTI TKSRESWTEQ EHDKFLEALQ LFDRDWKKIE  60
AFVGSKTVIQ IRSHAQKYFL KVQKNGTSEH VPPPRPKRKA ARPYPQKASK NESHALKPDS  120
SSIHRNSGLN ATVSSWTHNS VRPVIASPVV KVMPDFTQKL KEMNPIDVET ALLLMRNLSI  180
NLTSPNFEDQ DQRRIAQPGL PTYNCGSTDL RMVIGAWPSS TAPPVINEGS ANEPA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0948531e-141FP094853.1 Phyllostachys edulis cDNA clone: bphyem208j03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689659.11e-101PREDICTED: protein REVEILLE 6 isoform X2
SwissprotQ8H0W36e-73RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A3B6PMH21e-104A0A3B6PMH2_WHEAT; Uncharacterized protein
TrEMBLA0A446WH291e-104A0A446WH29_TRITD; Uncharacterized protein
STRINGEMT283981e-102(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.14e-59MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]