PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00022.1.g05590.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 440aa    MW: 47008.3 Da    PI: 8.9759
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00022.1.g05590.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.6e-18268318155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   + ykGVr++   grWv+e+r+p   g ++r++lg+f tae+Aa+a++ a+++l+g
  Zjn_sc00022.1.g05590.1.am.mk 268 PVYKGVRRRN-PGRWVCEVREP--HG-KQRIWLGTFETAEMAARAHDVAALALRG 318
                                   68*****887.9******9996..33.5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.3E-13268318IPR001471AP2/ERF domain
PROSITE profilePS5103221.694269326IPR001471AP2/ERF domain
SMARTSM003801.4E-26269332IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-29269328IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-20269327IPR016177DNA-binding domain
PRINTSPR003678.1E-8270281IPR001471AP2/ERF domain
CDDcd000181.73E-26270328No hitNo description
PRINTSPR003678.1E-8292308IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MQDGDGVRGE AAKRARVADK ERTVHGGDRS REQEGGRRDG DREASGNRSP GATGHGESPS  60
GPSPLATDLE PQRPGPMKLP LNRDAGRILC AALDASFALV RDTAFQRTLT AVAEERERER  120
ARAPGWGEAQ AGGRRPMTPR CARPNRSSAP RAPGGSDPTN LRSPLAREPV PRVLDPSSRA  180
NLAGISGAAT RRSSAHGHVA LDAPSTLPSR RSIRSIAMDV GALSSDYSSG MPSPVGGSDG  240
SSASYMTVSS APPKRRAGRT KFKETRHPVY KGVRRRNPGR WVCEVREPHG KQRIWLGTFE  300
TAEMAARAHD VAALALRGLG ACLNFADSPR LLRVPPLGAG HDEIRRAAAE AAEQFRPAFS  360
QDQGNVAVEE PITTLPDLLS SETHSTDRHP YCVVDDKFDL GMQGYLDMAQ GMLIDPPPME  420
GSSGNGGDDD DGGEVKLWSY
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6273530.0AB627353.1 Zoysia japonica gene for CBF, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953437.21e-115dehydration-responsive element-binding protein 1G
SwissprotQ6EP774e-92DRE1G_ORYSJ; Dehydration-responsive element-binding protein 1G
TrEMBLK3YVG61e-113K3YVG6_SETIT; Uncharacterized protein
STRINGSi018262m1e-114(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.15e-33C-repeat/DRE binding factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chen JQ,Meng XP,Zhang Y,Xia M,Wang XP
    Over-expression of OsDREB genes lead to enhanced drought tolerance in rice.
    Biotechnol. Lett., 2008. 30(12): p. 2191-8
    [PMID:18779926]