PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00022.1.g05900.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

G2-like

Protein Properties

Length: 405aa MW: 44124.9 Da PI: 9.7643

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00022.1.g05900.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	78.3	9.5e-25	96	145	2	51
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 prlrWt eLH++Fv av++LG ++kAtPk il+lm+v gLt++hvk HLQ Zjn_sc00022.1.g05900.1.am.mk 96 PRLRWTAELHHSFVGAVDSLGWPDKATPKLILQLMDVRGLTIAHVKNHLQ 145 8************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.0E-23	92	145	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.15E-11	94	145	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.0E-18	96	146	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MQQRCAGKKQ GAQRLRYAYY SVLLCSRLCW RFSTPLQRPL SGSGSSQQCS WLATQAEVES 60 KEGEVDQGLP AERAEGAMGG GRNGAVTRRY NRSKVPRLRW TAELHHSFVG AVDSLGWPDK 120 ATPKLILQLM DVRGLTIAHV KNHLQVGAEA AATHGSMQQR NSAMGAPGTQ HGSDDCMQAM 180 SMGRRRRMNQ GLGLQRDAST LQALGFWVRG SELFKVHQIS RPVANHISSV VGQLPSKEIS 240 FESRGFLFRH EQAVKRSQSL STLGPEAVEA TTSWPSESSV VLSPPSSTSF GGRSGASGCF 300 FARQRVNLEF SLVRQRKQYS KEGVAVETLP QTTSCTCMKS DTQADCPLGS NCMNEREQLQ 360 RAGCEVLRQV VGDEARPASC AVRIGNSSGW LVASCQSPVH TPLIT

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MQQRCAGKKQ GAQRLRYAYY SVLLCSRLCW RFSTPLQRPL SGSGSSQQCS WLATQAEVES  60
KEGEVDQGLP AERAEGAMGG GRNGAVTRRY NRSKVPRLRW TAELHHSFVG AVDSLGWPDK  120
ATPKLILQLM DVRGLTIAHV KNHLQVGAEA AATHGSMQQR NSAMGAPGTQ HGSDDCMQAM  180
SMGRRRRMNQ GLGLQRDAST LQALGFWVRG SELFKVHQIS RPVANHISSV VGQLPSKEIS  240
FESRGFLFRH EQAVKRSQSL STLGPEAVEA TTSWPSESSV VLSPPSSTSF GGRSGASGCF  300
FARQRVNLEF SLVRQRKQYS KEGVAVETLP QTTSCTCMKS DTQADCPLGS NCMNEREQLQ  360
RAGCEVLRQV VGDEARPASC AVRIGNSSGW LVASCQSPVH TPLIT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-13	97	145	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-13	97	145	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-13	97	145	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-13	97	145	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025799208.1	1e-64	uncharacterized protein LOC112879085
TrEMBL	A0A368PPP9	2e-62	A0A368PPP9_SETIT; Uncharacterized protein
STRING	Pavir.Ab02674.1.p	1e-61	(Panicum virgatum)
STRING	Si019625m	6e-62	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2966	35	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	4e-22	G2-like family protein