PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00022.1.g05950.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 238aa MW: 26343.2 Da PI: 10.5776

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00022.1.g05950.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.2	6.8e-06	104	126	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H Zjn_sc00022.1.g05950.1.sm.mk 104 FVCEVCSKGFQREQNLQLHRRGH 126 89*******************88 PP
2	zf-C2H2	13.2	0.00027	181	203	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + Zjn_sc00022.1.g05950.1.sm.mk 181 WKCDKCSKRYAVQSDWKAHSKIC 203 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	9.5E-6	103	126	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.09E-7	103	126	No hit	No description
Pfam	PF12171	5.0E-5	104	126	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	11.032	104	126	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0086	104	126	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	106	126	IPR007087	Zinc finger, C2H2
SMART	SM00355	150	146	176	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.1E-4	169	202	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.09E-7	176	201	No hit	No description
SMART	SM00355	140	181	201	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MASNSSAAAV AALLGIRDGD HHEQMKPLLA QPHQQSHVAP LNIGASSSAG SGQATAVPPL 60 PVKKKRNLPG NSSNGVSFLI YVHADPDAEV IALTPKTLMA TNRFVCEVCS KGFQREQNLQ 120 LHRRGHNLPW KLKQKDPAQA QRRRVYTCPE PTCAHHDPAR ALGDLTGIKK HFCRKHGEKK 180 WKCDKCSKRY AVQSDWKAHS KICGTREYRC DCGTLFSRKP GRRTTARRSG TISIHTEK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-22	177	219	3	45	Zinc finger protein JACKDAW
5b3h_F	3e-22	177	219	3	45	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP681642	1e-174	KP681642.1 Zea mays subsp. mays IDD9 (Nkd2) gene, nkd2-R allele, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001105281.2	1e-111	INDETERMINATE-related protein 10
Swissprot	O22759	3e-88	IDD12_ARATH; Protein indeterminate-domain 12
TrEMBL	A0A1E5V9G2	1e-118	A0A1E5V9G2_9POAL; Protein indeterminate-domain 6, chloroplastic
STRING	Pavir.Gb01057.1.p	1e-108	(Panicum virgatum)
STRING	GRMZM2G090595_P01	1e-111	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	5e-89	indeterminate(ID)-domain 12

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]